Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34480 337 / 2e-120 Ribosomal protein L18ae/LX family protein (.1) AT3G14600 335 / 2e-119 Ribosomal protein L18ae/LX family protein (.1) AT1G29965 328 / 7e-117 Ribosomal protein L18ae/LX family protein (.1) AT1G29970 324 / 3e-113 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019881 [exp] 370 / 2e-133 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10023454 [exp] 370 / 2e-133 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10014035 [exp] 373 / 2e-131 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1) Lus10040332 [exp] 312 / 7e-111 AT2G34480 290 / 4e-102 Ribosomal protein L18ae/LX family protein (.1) Lus10023456 [exp] 160 / 1e-51 AT2G34480 147 / 1e-46 Ribosomal protein L18ae/LX family protein (.1) Lus10023453 [exp] 121 / 3e-36 AT2G34480 112 / 4e-33 Ribosomal protein L18ae/LX family protein (.1) Lus10028130 [exp] 42 / 0.0001 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057600 [exp] 357 / 2e-128 AT2G34480 342 / 3e-122 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063400 [exp] 350 / 1e-125 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063300 [exp] 350 / 1e-125 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.011G072400 [exp] 350 / 2e-125 AT2G34480 349 / 4e-125 Ribosomal protein L18ae/LX family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01775 [flax] [poplar] Ribosomal_L18A Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Representative CDS sequence Show only first row Show all	>Lus10023457 pacid=23160464 polypeptide=Lus10023457 locus=Lus10023457.g ID=Lus10023457.BGIv1.0 annot-version=v1.0 ATGGTTGCTTACAGGTATCACCAGTACCAGGTTGTGGGGCGAGCTCTGCCGACTGAGAGCGATGAACATCCCAAGATCTACAGGATGAAGCTGTGGCATA CTAATGAGGTTCGCGCCAAATCCAAGTTCTGGTACTTTCTGAGGAAGCTGAAGAAGGTGAAGAAAAGCAATGGCCAGATGCTCGCTATCAACGAGATTTT TGAGAAGAACCCCACTAAAATCAAGAACTACGGCATTTGGCTACGATACCAGAGCAGAACGGGCTATCACAACATGTACAAGGAGTTCCGTGACACCACC TTGAATGGAGCTGTCGAACAGATGTACGACGAGATGGCTTCTCGCCACAGGGTGAGGTCTCCTTGCATCCAGATCATCAAGACTGCCACCATCCCGGCCA AGCTGTGCAAGAGGGAGAGCACCAAGCAATTCCACAACTCTAAGATCAAATTCCCGTTGGTGTTTAAGAAGGTTAGGCCACCGACCAGGAAGCTGAAGAC CACATACAAGGCGTCCAGGCCCAACTTGTTTGTCTAA
AA sequence Show only first row Show all	>Lus10023457 pacid=23160464 polypeptide=Lus10023457 locus=Lus10023457.g ID=Lus10023457.BGIv1.0 annot-version=v1.0 MVAYRYHQYQVVGRALPTESDEHPKIYRMKLWHTNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTT LNGAVEQMYDEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	0	1
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	1.0	0.9651
AT5G02610			Ribosomal L29 family protein ...		Lus10023449 [exp]	2.0	0.9595
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	3.9	0.9565
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	4.9	0.9581
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	5.7	0.9590
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	6.2	0.9311
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	6.6	0.9299
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	7.3	0.9339
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	8.9	0.9492
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	9.9	0.9493

Compare expression of checked genes

Lus10023457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.