Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18630 365 / 1e-124 Protein of unknown function (DUF677) (.1) AT4G34320 326 / 2e-109 Protein of unknown function (DUF677) (.1) AT5G66675 310 / 8e-103 Protein of unknown function (DUF677) (.1) AT4G34330 235 / 2e-74 Protein of unknown function (DUF677) (.1) AT5G66670 229 / 2e-71 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT5G66660 203 / 2e-61 Protein of unknown function (DUF677) (.1) AT3G28270 114 / 2e-28 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28300 101 / 1e-23 AT14A Protein of unknown function (DUF677) (.1) AT3G28290 101 / 1e-23 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 74 / 3e-14 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040334 [exp] 641 / 0 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10011295 [exp] 323 / 3e-108 AT4G34320 495 / 3e-176 Protein of unknown function (DUF677) (.1) Lus10040489 [exp] 320 / 2e-107 AT4G34320 458 / 9e-162 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031200 [exp] 379 / 1e-130 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.004G150800 [exp] 363 / 4e-124 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 352 / 6e-120 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 352 / 6e-120 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.005G127300 [exp] 328 / 2e-110 AT2G18630 340 / 4e-115 Protein of unknown function (DUF677) (.1) Potri.005G127200 [exp] 327 / 8e-110 AT2G18630 337 / 8e-114 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 326 / 1e-109 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.013G113800 [exp] 45 / 3e-05 ND / Potri.019G084400 [exp] 45 / 6e-05 AT1G77855 47 / 5e-06 unknown protein Potri.015G147400 [exp] 45 / 8e-05 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10023459 pacid=23160647 polypeptide=Lus10023459 locus=Lus10023459.g ID=Lus10023459.BGIv1.0 annot-version=v1.0 ATGGGAGGGAATTGCAGTACGGGCAACACCGCTATTGAAGAATCTCTTTCTCCTCCAACCCACAACATGAACCCTAATCCCCAACTTGCTTCAGCATTGA CATCATATGAAGATGCCTGTAAAACTGACCCAGACCTCCAGGCATTCGACGCAACCATCCACGAAAGGACGAATCGTGTCATCAATAGCCTCGCCACCAC CGTTGAGGTCAGATCGCTCTCGTTCGATTCGCTCAAGGAAGTCACAACTTGTCTCCTCGACATGAACCAGGAAGTAGTCAAAGTCATACTGGACTGCAAG AAAGACGTATGGAAAGACACTGGATTGTTCGAATTGGTTGAGGAGTATTTCGACAACAGCATCAAGACAATGGATTTCTGCGCCGTTCTCGAAAACTGCG TGAAGAACGCTCGAAATAGCCAGCTCCTCGTGCAGGTCGCGGTCAAACAGTTTGAGCAAGAACAGTCGTTGGGACAGAAGAAGTTCGTCAAGACATTACA CGAACTGCGGATGTTTAAAGACGCGGGGAATCCGTTCACACCGGAGTTCTTCGATTTGTTCCAGCTGGTTTACAGACGGCAGATTTCGATGCTGGAGAAG CTGCAGCGAAGGAAGACGAAGCTCGACAAGAAGATGAAGTCGATGAAGAAATGGAGGATGGCGACGAACGTGCTGTTCGTGTCTGCGTTCGTCTCCGTCC TGGTGTTCTCTGTCGTGGCAGCTGCCGTAGCTGCACCTCCTGTTATAACAGCGCTGGCAGGTGCATTGGCTGTTCCGATTGGTTCGATTGGAAAATGGTG CAACAATCTGTGGAACAAGTATATGCAGGCGTTGAAGGGGGAGAAGGAGCTTGTTAGCATGTTCCAGGTGGGGACTTTCATTGCCATCAAAGATATGGAC AATATAAGGGTGCTTGTGGAGAAATTGGAAGTGGGAATCGAGGCGCTGGTGGGGAATGCGGGGTTTGCGTTAAGGGAAGGAGATGATGATGATGATGGTC GTGCTGTGGAGCTTGTGATAGATGAGATTAAGAAGAGGTTGGAGATGTTGACAGAGAGTATTGATGCGTTGGGGGAGCATACGCATAAATGTAGCCGCGA TATTAGCCAGGCGAGGACCGTGATCTTGCAGAAGATAATCAGATACCCGGGACCTTGA
AA sequence Show only first row Show all	>Lus10023459 pacid=23160647 polypeptide=Lus10023459 locus=Lus10023459.g ID=Lus10023459.BGIv1.0 annot-version=v1.0 MGGNCSTGNTAIEESLSPPTHNMNPNPQLASALTSYEDACKTDPDLQAFDATIHERTNRVINSLATTVEVRSLSFDSLKEVTTCLLDMNQEVVKVILDCK KDVWKDTGLFELVEEYFDNSIKTMDFCAVLENCVKNARNSQLLVQVAVKQFEQEQSLGQKKFVKTLHELRMFKDAGNPFTPEFFDLFQLVYRRQISMLEK LQRRKTKLDKKMKSMKKWRMATNVLFVSAFVSVLVFSVVAAAVAAPPVITALAGALAVPIGSIGKWCNNLWNKYMQALKGEKELVSMFQVGTFIAIKDMD NIRVLVEKLEVGIEALVGNAGFALREGDDDDDGRAVELVIDEIKKRLEMLTESIDALGEHTHKCSRDISQARTVILQKIIRYPGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	0	1
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	1.0	0.8485
AT1G63610			unknown protein		Lus10030753 [exp]	4.9	0.7630
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	7.4	0.7836
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	9.4	0.7925
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	11.0	0.7930
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	12.0	0.7731
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	15.0	0.7756
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	17.1	0.7817
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10037487 [exp]	18.1	0.7188
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042796 [exp]	18.2	0.7354

Compare expression of checked genes

Lus10023459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.