Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12360 771 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 679 / 0 Ankyrin repeat family protein (.1) AT2G31820 322 / 5e-102 Ankyrin repeat family protein (.1) AT5G60070 317 / 1e-101 ankyrin repeat family protein (.1) AT1G05640 318 / 6e-101 Ankyrin repeat family protein (.1) AT1G07710 306 / 2e-97 Ankyrin repeat family protein (.1) AT5G02620 296 / 9e-94 ATANK1, ANK1 ankyrin-like1 (.1) AT2G01680 290 / 4e-91 Ankyrin repeat family protein (.1) AT1G03670 90 / 1e-18 ankyrin repeat family protein (.1) AT5G54710 89 / 2e-18 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003308 [exp] 824 / 0 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 798 / 0 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 662 / 0 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 645 / 0 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 333 / 1e-107 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 333 / 3e-107 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 318 / 8e-101 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 313 / 1e-99 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 309 / 2e-98 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048400 [exp] 808 / 0 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 803 / 0 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 695 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 343 / 2e-111 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 338 / 7e-110 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 338 / 8e-110 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 324 / 4e-104 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 324 / 1e-102 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 320 / 1e-101 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 310 / 5e-99 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10023460 pacid=23160552 polypeptide=Lus10023460 locus=Lus10023460.g ID=Lus10023460.BGIv1.0 annot-version=v1.0 ATGGAGAAAGGACTCCTCCCTGAGCTCTCACTTTCACCCTCCTCTGCATCAACAGCTCCTGCTCTGGTTCTGTCCAATTCCGGGAAAAGAATGGATCAAG CTGGAAACAAGAAGAAGTACGTCAAACAAGTAACTGGACGCCACAACGACACTGAGCTCCACCTGGCAGCTCAGCGTGGCGATTTGGCTGCTGTCAAGCA GATTCTGGATGATATTGACACCCAAATGCTTGATGACTTGGATACCGAGGTTGCAGAGATAAGGGCTTCGGTCGTCAATGAGCTGAATGAGCTTGGAGAG ACTGCCTTGTTTACTGCTGCTGAAAAAGGTCATCTTGAAGTAGTGAAAGAGCTTCTGAAGTATTCGAGTAAGGAATCCACTGCTCGGAAGACCTGGTCCG GGTTTGATCCCCTCCATATTGCTGCTTTGCAAGGGCACCATGCAATTGTTCAAGTTCTACTTGACCATGATCCTAGCCTGAGCCAAACATACGGGCCGTC GAATGCCACGGCTCTTGTATCTGCTGCCACCAGAGGGCACACTGCTGTCGTCCATGAGTTGCTGTGCAAGGATGATACTTTATTGGAGATTGCTATGTCC AACGGTAAAAATGCGTTGCATTTAGCTGCAAGGCAGGGGCATGTTGAAATCATGAAGGCATTGCTAACCAAAGATCCGCAGTTGGCACGAAGGACCGACA AGAAAGGGCAGACTGCATTGCACCTGGCTGTCAAAGGCCAGAGCTGTGAAGTTGTGAAATTGCTTCTTGCTGCTGATCCTGCAATTGTCATGCTCCCAGA CAAGTTTGCCAATACTGCATTACATGTGGCCACCAGAAAAAAGCGCTCTGAGTTTGTGAATGAACTGTTATTACTTCCCGATACGAATGTGAATGCGCTG ACTAGAGATCACAAAACAGCTCTTGATATAGCCGAAGAGCTTTCCCTTTCGGAAGAATCTTCGGATATAAAGGAGTGTCTTTCTCGGCTAGGAGCCGTTA GAGCCAATGAACTCAACCAACCAAGGGATGAGCTGAGAAAGACAGTCACACAGATCAAGAACGATGTCCATACTCAGCTCGAGCAGACCAGAAGGACGAA CAAGAATGTGCACAACATCTCGAAAGAGCTGAGGAAGCTCCACCGCGAAGGGATCAACAACGCTACCAACTCCGTTACTGTGGTAGCTGTCCTGTTCGCC ACTGTTGCATTCGCAGCGATTTTTACTGTCCCCGGAGGGGACGATGACAACGGACTGGCTGTTGTGGTGACGCATCTTTCTTTCAAGATCTTCTTCGTGT TCAACGCCATTGCGCTCTTCACATCGTTGGCTGTCGTGGTGGTCCAGATCACGCTGGTGAGAGGGGAGACGAAAGCTGAGAGACGGGTAGTGGAGGTGAT CAACAAGCTGATGTGGTTGGCTTCTGTGTGCACCTCGGTGGCGTTCATGGCGTCTGCTTATATAGTGGTTGGCAGGAAACATGAATGGGCTGCAATTCTG GTGACGGTCGTTGGTGGAGTGATCATGGCTGGCGTTCTGGGGACCATGACTTACTATGTTGTGAAGTCGAAGAGGAGTCGGTCCATGAGGAAGAGGGAGA AGAAGTATTCTAGAAAGAGCGGGTCGAATTCGTGGCATCACTCGGACTTTTCGAATTCGGAAGTTGATCGAATCTACGCCCTGTGA
AA sequence Show only first row Show all	>Lus10023460 pacid=23160552 polypeptide=Lus10023460 locus=Lus10023460.g ID=Lus10023460.BGIv1.0 annot-version=v1.0 MEKGLLPELSLSPSSASTAPALVLSNSGKRMDQAGNKKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIDTQMLDDLDTEVAEIRASVVNELNELGE TALFTAAEKGHLEVVKELLKYSSKESTARKTWSGFDPLHIAALQGHHAIVQVLLDHDPSLSQTYGPSNATALVSAATRGHTAVVHELLCKDDTLLEIAMS NGKNALHLAARQGHVEIMKALLTKDPQLARRTDKKGQTALHLAVKGQSCEVVKLLLAADPAIVMLPDKFANTALHVATRKKRSEFVNELLLLPDTNVNAL TRDHKTALDIAEELSLSEESSDIKECLSRLGAVRANELNQPRDELRKTVTQIKNDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFA TVAFAAIFTVPGGDDDNGLAVVVTHLSFKIFFVFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFMASAYIVVGRKHEWAAIL VTVVGGVIMAGVLGTMTYYVVKSKRSRSMRKREKKYSRKSGSNSWHHSDFSNSEVDRIYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	0	1
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	5.3	0.9714
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021287 [exp]	8.9	0.9626
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10014148 [exp]	10.2	0.9710
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	10.4	0.9627
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	14.7	0.9660
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024060 [exp]	16.5	0.9516
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	17.0	0.9706
AT3G48140			B12D protein (.1)		Lus10036977 [exp]	18.3	0.9671
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	18.4	0.9695
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	19.2	0.9479

Compare expression of checked genes

Lus10023460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.