Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39370 137 / 2e-37 MAKR4 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein AT2G37380 56 / 2e-08 MAKR3 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein AT5G26230 43 / 0.0002 MAKR1 membrane-associated kinase regulator 1, unknown protein AT4G22190 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040336 [exp] 416 / 5e-146 AT2G39370 174 / 8e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10003309 [exp] 159 / 7e-46 AT2G39370 175 / 2e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10030311 [exp] 157 / 6e-45 AT2G39370 181 / 4e-54 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10024441 [exp] 44 / 0.0002 AT2G37380 87 / 8e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048300 [exp] 164 / 5e-47 AT2G39370 175 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.010G212800 [exp] 152 / 3e-42 AT2G39370 176 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.016G080800 [exp] 104 / 3e-25 AT2G39370 157 / 9e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.006G214700 [exp] 88 / 3e-19 AT2G39370 116 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.010G090500 [exp] 47 / 7e-06 AT5G26230 150 / 5e-42 membrane-associated kinase regulator 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023461 pacid=23160487 polypeptide=Lus10023461 locus=Lus10023461.g ID=Lus10023461.BGIv1.0 annot-version=v1.0 ATGGCTGCAAATCTGCCGCAATCACATGATCATCACCATTCAGATGATGAAGATGACTTCATTGACATGGAAATCACCTCATCATACCCCACAAGCATCC TTCTCCAAACCATGAACTCAAACTCAAGGGAGTTTGAGTTCCAAAAAATGTCTTCAACATCTCTAGACCAGAAAGACCACTCAACTTCACCAGCTGATGA GCTCTTCTACAATGGAAAGCTCCTCCCTCTCCACCTCCCACCGCGTTTCCAAATGGTCGATAAGATCCTCCGGAACTCCTCAAGCTTCTACTCTTCTGCT ACCACCACCACTCCCTATGATGGTGATGATTGCAGAAATAAAGATGTGTTCTTTGATAAAGAATTCTACAGCACACCACTAATGACAACAACTCCTACCC CTTATGATTCCTGTAACATATCTCCATTCGATTCTTGCCCCGTGAGCCGGGAGCTTAACCCTGAGGAGTACTTGGCTGAGTATTCATCATCTGAGGTGAA TTCTGGCTACCTGCACAATTCAAAGAGATCATCATCATCATCATGGACCAAGAAGCTCAAGCTGATGAAAAGTTCCGGTCTTGGTTCGAAACTCAAGGCT CCTAGAGCTTACCTCAAGGCCTTGTTTGGGAAGTCTGGCTGCTCAGATGAATCCTCATCTGCTGCAAAAGTTGCAGATGAAGGAACCCTTTCAAAAGCTA GGAATGAAGCACAGAAAGCTCCTTTTGGTCAGATACAAGCATTTCCAGTAGTCAACAAACAGAAAGCTGTCCATAGAAGATCATTTTCTTTAGCCATCAA ATGGAACTCGTCAGCTACCAAGTCTTCGTCGAATTCATCGTCTGATTCTTCATCGTTGTCGGGTTCTTCTTCATCATCAAGCTTGAGCAGTACCAGCAGC AGTAGTTCAAGTGGGGTGCCATTTCTGAAGAGGAGTACAAGTACTGTGATTAGTACAGAAGTTGAGAATCCAATCCAAGGAGCCATAGCACACTGCAAAC TGTCTCAGGAGGCTATTTGTTGA
AA sequence Show only first row Show all	>Lus10023461 pacid=23160487 polypeptide=Lus10023461 locus=Lus10023461.g ID=Lus10023461.BGIv1.0 annot-version=v1.0 MAANLPQSHDHHHSDDEDDFIDMEITSSYPTSILLQTMNSNSREFEFQKMSSTSLDQKDHSTSPADELFYNGKLLPLHLPPRFQMVDKILRNSSSFYSSA TTTTPYDGDDCRNKDVFFDKEFYSTPLMTTTPTPYDSCNISPFDSCPVSRELNPEEYLAEYSSSEVNSGYLHNSKRSSSSSWTKKLKLMKSSGLGSKLKA PRAYLKALFGKSGCSDESSSAAKVADEGTLSKARNEAQKAPFGQIQAFPVVNKQKAVHRRSFSLAIKWNSSATKSSSNSSSDSSSLSGSSSSSSLSSTSS SSSSGVPFLKRSTSTVISTEVENPIQGAIAHCKLSQEAIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	0	1
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	1.0	0.8787
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10020584 [exp]	2.0	0.8582
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	2.4	0.8388
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10004796 [exp]	10.7	0.7517
AT4G37700			unknown protein		Lus10011707 [exp]	13.7	0.7745
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10014705 [exp]	14.8	0.7292
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	19.9	0.7825
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	25.1	0.8275
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10024305 [exp]	34.3	0.7841
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	36.7	0.8245

Compare expression of checked genes

Lus10023461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.