Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13560 767 / 0 unknown protein AT2G37370 558 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040337 [exp] 1293 / 0 AT5G13560 791 / 0.0 unknown protein Lus10025285 [exp] 502 / 8e-170 AT2G37370 535 / 0.0 unknown protein Lus10009063 [exp] 246 / 1e-73 AT2G37370 241 / 4e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048100 [exp] 820 / 0 AT5G13560 668 / 0.0 unknown protein Potri.010G212900 [exp] 819 / 0 AT5G13560 749 / 0.0 unknown protein Potri.016G080900 [exp] 600 / 0 AT2G37370 676 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023462 pacid=23160641 polypeptide=Lus10023462 locus=Lus10023462.g ID=Lus10023462.BGIv1.0 annot-version=v1.0 ATGTCGTGGTTGAAATCCGCCGTGAGCAAGGCAGTGGAGGTTGGGAATAAGAACAACCTGACTCGCGCCGTCAAGAACTATGCCGACTCCGTCGTTCATC AGGCTGGCCAGGCCGTCTCCGAAGGGGCTAAAATCTTGCAGGATCGCATCGCCACTCGCAACTATAGAAGTGCTAAGCAAACAATCAAGAGATTGGAAGA GGCAGCTGTCTCCTGCAGGGGCCAGGAGAGGATTATGTTAATGAGAAGATGGTTAGCGGTTCTCAAAGAAGCTGAGAAATCAGGAACAGCTTCTTTGGAA GATAATAAATATAAGGCTATGGATCAGTATCTTCAGCATGATGATGCTAGAGAAAGTCCGAGAAAACCATCTACAATTCTCTACTATGATGCTGATGTTG GTGGTGAACCGCTTCCTTTCCGTGATATTTTCCTACAAAGTCAAGCTTTGGAGGGCATAACATTGTCCATGATACTTCACGCTCCACATGACGATGAAAT TGTATTGTTGCTGGAGATCTTTGGAGTTTGTCTAACTGGCGGAAAGGAAGTACATATTGCAATTCTTAGCAGCATTCAGGATCTAGCTACTGCTTTTACA AAATACAAGGATGAAGTGCTGGTCAAACGGGAGGAATTACTTCAATTTGTGCAAGGTGCCATTACAGGGCTGAAGATTAATGCTGAGTTGGTTAGAATTG ATGCTGAAACTGTTGACCTGAGGAACAAACTTGATGGGATGACTGTGCATGAGAAGCCAAAAAGTGAAACCCTGGACAAGGAAACTGATGATACCCCTAT TGCAGCTATAGAGGCTCTTAGACAAGCATTAGCTAGAATTCGAATTTGTTCGAGATTGGAGGGGCTTTTGTTGAAAAAGAAGCATCTAACCTTTGGTGAC ACTCCTGACATTCATGCTCAAAAGGTCGACAAGTTGAAGGTCTTGACAGAATCTCTTGCTAGTTCTGTATCAAAATCAGAAAAGCGTATCTTAGATCACA GATCACAGAAGGAAGAGGCACTGAAAGTTCGTGTCTCTAAAGCTGATGAGACCAGTGAAAAGGAAAAGGAAATAGTGGCCGAGATAAGTGGACTTGAAAA GGAAAGAGATGAACTGGAGGCCCAGTTGAAAAAGGTTAATATTTCCTTAGCGGCTGCAAATGCACGCCTCAATAATGCCAGAGAAGAGAGGGACCAGTTT GAGGATGCAAACGGTCAGATCATTGAGCATTTGAAGTCAAAGGAGGATGAGTTAAGGAGTTCGATTTCCGCATGCAAGGTAGAGTCAGATGTTCTGGGCA CATGGGTTAATTTTCTGGAGGACACTTGGGTTCTCCAGCGTACCTATGTAGAAATGACGGAGAAGCAGGTCAATGATGAATTGGAAAAACATGAAGAGTA CTTCACAAGCTTGGCCATCAATCTTCTATCCGAGTATAAGAAAGAATTGGAGCCTTCTATTGGCCGCATTGGAACATATGTGGAGAACCTAAAGAAGTTA GGTCCAGGGTCAGATACATCAGTTAATCCAGATAAGCAAGATTCCGAAGCATTAAGTCCAAGGCAACATCTTGAGGAAGAATATCTGCAGTACGAAGCAA AGATTGTGACCACCTTCAGTGTAGTAGATAACATGAGAGAGCATTTCTATGCTCAGCAAGGTGCAAATTCCAGGAAAGACGACGAAAGGGTGAAAGAGTT ATTTGATGAAATCGAGAATCTGAGACAGCAATTCGATGCCATCGAGAGACCGAATCTTGAGATGGAGGTTCCGAGTTCCAACCAAGAAACAGTACCGTCC GAGAAGCCGGCCGAAAAGCCATCCAACCCTTCGGAACATGGTGATAGTTCGACAAAAGCCGAGACAGAGGAGCTTCCGAAGGTAGCTACTTCACCGAAAT CGTCCACAGCCAAAGATATCAAGAAGAAACCGTCACCTACCGCAAGTGGCGGTGAGGCAGGAAAGAGCCTCGATGCAGAAGCAGAACTAGCGGAGCTGGA GTCAGAGTTTGGCAAGGTCGATCGAGATTATTCGGCGGAGGAGGTTGGCGATTGGGAGTTCGATGAGCTCGAGAGGGAGTTACGAGCTGGTGATTCAGCA TCATCAGCAGGAGGATCAGGAAAGTGA
AA sequence Show only first row Show all	>Lus10023462 pacid=23160641 polypeptide=Lus10023462 locus=Lus10023462.g ID=Lus10023462.BGIv1.0 annot-version=v1.0 MSWLKSAVSKAVEVGNKNNLTRAVKNYADSVVHQAGQAVSEGAKILQDRIATRNYRSAKQTIKRLEEAAVSCRGQERIMLMRRWLAVLKEAEKSGTASLE DNKYKAMDQYLQHDDARESPRKPSTILYYDADVGGEPLPFRDIFLQSQALEGITLSMILHAPHDDEIVLLLEIFGVCLTGGKEVHIAILSSIQDLATAFT KYKDEVLVKREELLQFVQGAITGLKINAELVRIDAETVDLRNKLDGMTVHEKPKSETLDKETDDTPIAAIEALRQALARIRICSRLEGLLLKKKHLTFGD TPDIHAQKVDKLKVLTESLASSVSKSEKRILDHRSQKEEALKVRVSKADETSEKEKEIVAEISGLEKERDELEAQLKKVNISLAAANARLNNAREERDQF EDANGQIIEHLKSKEDELRSSISACKVESDVLGTWVNFLEDTWVLQRTYVEMTEKQVNDELEKHEEYFTSLAINLLSEYKKELEPSIGRIGTYVENLKKL GPGSDTSVNPDKQDSEALSPRQHLEEEYLQYEAKIVTTFSVVDNMREHFYAQQGANSRKDDERVKELFDEIENLRQQFDAIERPNLEMEVPSSNQETVPS EKPAEKPSNPSEHGDSSTKAETEELPKVATSPKSSTAKDIKKKPSPTASGGEAGKSLDAEAELAELESEFGKVDRDYSAEEVGDWEFDELERELRAGDSA SSAGGSGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13560			unknown protein		Lus10023462 [exp]	0	1
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036170 [exp]	2.8	0.8060
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	5.7	0.8419
AT5G59830			unknown protein		Lus10024426 [exp]	10.5	0.7896
AT5G11700			unknown protein		Lus10011144 [exp]	12.4	0.8273
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	14.7	0.8082
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	17.1	0.7969
AT4G32160			Phox (PX) domain-containing pr...		Lus10001495 [exp]	18.0	0.8052
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	18.3	0.7959
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	21.4	0.7634
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	25.9	0.8133

Compare expression of checked genes

Lus10023462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.