Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19230 108 / 5e-25 Leucine-rich repeat (LRR) family protein (.1) AT3G46270 103 / 2e-23 receptor protein kinase-related (.1) AT2G14510 101 / 2e-22 Leucine-rich repeat protein kinase family protein (.1) AT3G46260 97 / 3e-21 protein kinase-related (.1) AT1G51910 96 / 2e-20 Leucine-rich repeat protein kinase family protein (.1) AT1G05700 95 / 4e-20 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51790 95 / 4e-20 Leucine-rich repeat protein kinase family protein (.1) AT3G46280 93 / 5e-20 protein kinase-related (.1) AT2G14440 94 / 1e-19 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 93 / 2e-19 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029192 [exp] 147 / 3e-41 ND / Lus10010734 [exp] 139 / 7e-37 AT1G69980 159 / 1e-47 unknown protein Lus10033972 [exp] 136 / 7e-37 AT4G15610 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1) Lus10024766 [exp] 128 / 9e-34 ND / Lus10010252 [exp] 130 / 1e-33 ND / Lus10009191 [exp] 126 / 4e-33 ND / Lus10010593 [exp] 120 / 1e-31 ND / Lus10012669 [exp] 115 / 6e-29 ND / Lus10025380 [exp] 119 / 8e-28 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213101 [exp] 123 / 4e-33 AT3G19230 79 / 4e-18 Leucine-rich repeat (LRR) family protein (.1) Potri.005G043700 [exp] 100 / 4e-22 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.013G030100 [exp] 94 / 4e-20 AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.008G150200 [exp] 90 / 6e-19 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G030800 [exp] 90 / 1e-18 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.013G030866 [exp] 88 / 1e-18 AT3G46280 183 / 2e-53 protein kinase-related (.1) Potri.009G102300 [exp] 89 / 2e-18 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 83 / 1e-16 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G242700 [exp] 82 / 7e-16 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094250 [exp] 77 / 5e-15 AT1G05700 184 / 8e-52 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023463 pacid=23160483 polypeptide=Lus10023463 locus=Lus10023463.g ID=Lus10023463.BGIv1.0 annot-version=v1.0 ATGAAGATATGCTTGCCATGGATGCTTCTCTTCCTCTCAACATTTCAGTTCATATCATACAAGGCTTCTTCTCAAGCTATCCCAATTCCAGACATTCTAG GCGTGGGAATGTTGAGCATCGACTGCGGCAACACACTAATACCACCCATCACCGAGCTGCCACTCTGGACCCTCGACAAAAACTACACAACAACAGGAAT CACCGCCCATCTCTCCACCACAACTACCCGCCCCGAGATGTCATCCCTCCGGTTCTTCCCCGATCCAACGGCTAAGAACTGCTACACCCTCCCCACCCTT AAACTCAGTCTCAAGTACCTGATCCGGGCAGGCTTTTACTACGGTAACTACGACTCCGCGAACAACCCTCCCACGTTCGACCTCTACCTCGACGGTAAAA AATGGTCGACGGTGAATACGACCCTGTCGTCGGCCGGAGACCCGGTGTACCGCGAGATCGTGTACGTCGTGCAGACCGGTTCAGATTCGATCGGGCTGTG CTTGGCCCGTACCCGAGATGGGGAGGTTCCTTTTGTTTCTTCGATTGAGATTGTGCCGGTTTATAATGCTTTGTATACTGAGATGGGAAGTGTTGATAGC TTTGGTCTTGTTGCGCGGACCAACCTTGGTGGCCCTGAACTCAGAAAGTTCAACGAGAATGTTACGAACAAGTTTTGCCGCCCCGATGAGTCAAAGGATT TGTTCAACTACTTTGGAGAAGAGGTGAAGTGCGATTGCGGATTTCGTGCAGCGAGACTAATGACGCCGAAGTTCGAGAAATACCTCAATTGTCCTTTCTA TAAGTGTAGGTTCAAGAAGAAGTTGGAGGTGATGTTGGCTGAGAACTCGGTGAGGCGTGACACGCGAGCTACAATGGATGTACGGCCGCGGAACGAATTG TTCCTCTTGGGTCCTCTGTCGTCAACGTTTGGTAGGGGGGACAGCCGCCTGGATCAGTGGTTCAACTGCGTACGGATCGTAAGCCCGTGTAGATTTGTCC AGTGGGAGGCATCAAGCCTACACTCCATGCCTCCGCTCGCGTACATCATAGAACACAGACACTACCGAACTGCCTCGGTGTCCTCTCGGCCGAGCTGCTC CAGTGAACCTACCCTAAAAGATAGTTTCTCCAACCCAAACGGGATCATCACCACCGGCGAATTCCACAACAGGATATGGACACGTGGAATCAACCCACCA AACACCATCTTAACAACCACCGTGGCAAATATTTTACCCGTTACTCCGGTGCAAAACGACCCGCCTTTTGCGGCGTTGACCGACTCTGTCCAATCAAAGT CCCCCGACAATCCTATAATCCTCACCATCGATCTCCTTCCGGAACAGCAGACCGCATTCCTCGTGTTCTACTTCACCGAAGTGCTACTCCGGCCCAAAAT TGACGACACCAGAGTCATGGATATCTACGTCGACGGTAAGCTGATGACGTCGGCGGCGGCCGAGCTCACCAAGTGTAAGGTAGTGACGCTGACTGGAATC ACCGTCAGTCCACCCAGCGTTAACGTCACATTGGCGAAATCGAACTCGTCGACCCTGCCGCCGATGATCAGCGCAATGGAGGTGTTCACGAAGGTTGAGT TCAGCTCTGCCGCTTCCGGAGGCGGATCGAAGTCCCCCGGCGGCGGTGCACATCGGCGTCTTGTTGTTGTGTCGCGCGTGGTGTTCGTCCACGTTATGTC AATCTTGTTCGTGTTTTGGTTCTAG
AA sequence Show only first row Show all	>Lus10023463 pacid=23160483 polypeptide=Lus10023463 locus=Lus10023463.g ID=Lus10023463.BGIv1.0 annot-version=v1.0 MKICLPWMLLFLSTFQFISYKASSQAIPIPDILGVGMLSIDCGNTLIPPITELPLWTLDKNYTTTGITAHLSTTTTRPEMSSLRFFPDPTAKNCYTLPTL KLSLKYLIRAGFYYGNYDSANNPPTFDLYLDGKKWSTVNTTLSSAGDPVYREIVYVVQTGSDSIGLCLARTRDGEVPFVSSIEIVPVYNALYTEMGSVDS FGLVARTNLGGPELRKFNENVTNKFCRPDESKDLFNYFGEEVKCDCGFRAARLMTPKFEKYLNCPFYKCRFKKKLEVMLAENSVRRDTRATMDVRPRNEL FLLGPLSSTFGRGDSRLDQWFNCVRIVSPCRFVQWEASSLHSMPPLAYIIEHRHYRTASVSSRPSCSSEPTLKDSFSNPNGIITTGEFHNRIWTRGINPP NTILTTTVANILPVTPVQNDPPFAALTDSVQSKSPDNPIILTIDLLPEQQTAFLVFYFTEVLLRPKIDDTRVMDIYVDGKLMTSAAAELTKCKVVTLTGI TVSPPSVNVTLAKSNSSTLPPMISAMEVFTKVEFSSAASGGGSKSPGGGAHRRLVVVSRVVFVHVMSILFVFWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05700			Leucine-rich repeat transmembr...		Lus10023463 [exp]	0	1
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	8.7	0.6898
					Lus10024718 [exp]	11.0	0.7085
					Lus10005609 [exp]	16.5	0.7057
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	18.7	0.6796
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	20.4	0.7072
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	22.1	0.6939
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	22.8	0.6843
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10001811 [exp]	27.1	0.6575
					Lus10038412 [exp]	39.7	0.6503
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	40.6	0.6634

Compare expression of checked genes

Lus10023463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.