Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28060 672 / 0 Pre-mRNA-splicing factor 3 (.1) AT3G55930 270 / 9e-82 Pre-mRNA-splicing factor 3 (.1) AT3G56790 64 / 4e-11 RNA splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040340 [exp] 1278 / 0 AT1G28060 751 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10031931 [exp] 91 / 3e-20 AT3G55930 71 / 5e-14 Pre-mRNA-splicing factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048000 [exp] 811 / 0 AT1G28060 652 / 0.0 Pre-mRNA-splicing factor 3 (.1) Potri.010G213300 [exp] 805 / 0 AT1G28060 653 / 0.0 Pre-mRNA-splicing factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0622 [flax] [poplar] Acylphosphatase PF06544 [flax] [poplar] DUF1115 Protein of unknown function (DUF1115) CL0622 [flax] [poplar] PF08572 [flax] [poplar] PRP3 pre-mRNA processing factor 3 (PRP3)
Representative CDS sequence Show only first row Show all	>Lus10023464 pacid=23160583 polypeptide=Lus10023464 locus=Lus10023464.g ID=Lus10023464.BGIv1.0 annot-version=v1.0 ATGGATCGTTCCACCTCCGACAAGGATAAACCCTCCAAGCGTTACCGCGACGAACGGGATCGGGACTCCGGCAGAGACCACCATGATAGGGAACATAAGC ACAGATCGCGGGAAAAGGATCGGGATAGTACCTCTCACCACCACCACCGGTCGGATCGCGATGATCACAATCGTGACCGCCACCACCACCGCAAGTCTTC GTCGAAGCGCGAGGATCGTGAGGGCTCTCGTGACCGAGATATCAAGCGAGAGCGGTCGGTAGATTTGAGAGACGATCGAGAAGGTAGCAGGGAGAGAGTG CACGAACGTCGGAAGCCAGGCGAGAGGGAAGTTAAGTGGGAGGAATCCTATGACGGCAGGGAGAACGAAGAGTTTGACGACGTTAATAGAAGGAAGAGAA AAGACAGAGAAGGAAGTGGGGATGAAAGGGAGAAGAAGGAAGCTAGAGTGTCGCATGTAAAGAGAGAGAGGAGGAAATTTGGTGATAAGGTGAAGGAAGA GAATGATAATGATAATGGCGAGAGTGCTCGTGTTACTGATAATTCGAATAGAGGTGAGTTTAGTGAGATTAAGGTTAAAGAAGAAGTTATCGAGGAGCCA ATAGCTGGTGGCAGCACCGTCATTGCGGGAATTCCTGCTCTAAATGGTGCGGCCTCCAGGTCATTGGCTGAGCCTTCGAGCATTGCTGTGTCCTCTGTAC CTTCTCACTTATCTCTTCCTTCCAAGGTATCTTCAATTTCAAACACAAATGAAAATAAGGGAGTTAGTGTTACCAGATCTCATGAGGTTCCTGGAAAATC TAGTACAGATGGAACATCATCGATTGCGGGAAAAAGTGGAAGTTCATCCCTTGATGCTTTAGCAAAAGCTAAGAAAGCTATAGAAATGAAGAAGGGCATA CAACAGAAGTTGGAGAGGCTACGCATGTTGAACAAAGCTAATAATTCAAGTTCAGGTGGTGCTAAAGATGGTGTGAAAGTGCCATCTTCCTCTGCTGGTG TTTCTGCTACTGCAACTCCTATGGGACAAACTGCTAGCGGCTTTCCACCGATTCCGGGTCTCAATAGCATACCTAACTACGAAGCTGTTAGACGAGCACA GGAGCTTGCTGCTAAGATGGGCTTCCGTCAGGATCCTGAGTTTGGCCCACTTATAAACTTGTTCCCTGGGCAGATGCAGACGGAGGCTGCTGTGCCACAG AAGCCTACTAAGGTTCCTGTTCTCCGCGTAGATGCACTGGGGAGGGAAATAGATGAAAATGGAAATGTTGTGAATGTGACTAAACCAAGCAACCTTAGCA CGCTCAAGGTCAACATCAACAAGCAGAAGAAGGATGCTTTCCAGATTCTTAAGCCTGAGTTGGAAGTGGATCCTGAATCAAACCCTCATTTCGATGCTAG AATGGGCATCGATAAGGTTAAGCTGCTGAGACCGAAGCGGATGTCTTTCCAGTTTGTTGATGAAGGGAAATGGTCAAAGGACGCCGAGTCAATAAAATTG AGGAATCAATTTGGTGAAGAAAGAGCGAGAGATATGAAGGCCAGGCAAGCACTTCATGCGAAGGCTAAAGCAGCTCCTGATATAAATCCTAATCTTATAG AGGTTGGGGAAAGAGCTATGACGACGAAAGAAAAGGTGAAGGATCCAATTCCGGAAATTGAGTGGTGGGATGTGCCTCTTGTGGTTGGTGGTGCGTACGG TGAATACGAGGACGGCATTGTCGAGGACAATCAACTGAAGATGGAAAAAATCACAATCTACGCAGAACATCCATGCCCGATCGAGCCTCCTGCAGAGCCA GCTCCTCCTCCGCCACAGCCTCTGAAGCTAACTAAGAAGGAACATAAGAAACTACGAACTCAACGCCGTCTTGCTAAAGAGAAAGACAAGCAGGAGCTAA TTCGACAAGGCCTGCTCGAACCTCCAAAGCCGAAAGTCAAACTGAGCAATCTAATGAGGGTTCTCGGCTCTGAAGCAGTACAGGATCCGACCAAACTCGA GAAGCAAGTCCGTAATGATGCAGCTGAGCGCGAGCAAGCGCATATCGACAGGAACATTGCGAGGAAGCTCACTCCTTCCGAAGTCAGCGAGAAAAAGAAG AGGAAGCTGTTCAATGACAAGAATACGGTCGGAACGATGGTTTCGGTTTACAGAGTCAACGATCTCTCCCACAAGAAGACCCGGTTCAGAGTTGATGCCA ATGCGGGTGAAAACCAGTTGTCCGGGTGTTGTGCTATCACCGAGGGATTTAGCGTTGTGGTTGTTGAAGGTGGGAGCAAATCGATTAAGAGGTACGGGAA CTTGATGCTTAGGCGTATTAATTGGGCAGAGGCTGTGAATGATGAGGAAGAGGAAGGTGGTGGTGGTGGTGATGATATGCCGCCCAACAAATGCGTACTG GTCTGGCAAGGGATTGTTGCGAAACCTAGCTTTCACAGGTTTTCGGTGCACGAGTGCATGACTGATGCTGCTGCCAGGAAGATATTTGCGGATGCTGGTG TCGTCCAGTACTGGGATCTCGCAGTCAACTTCTCGGATGACATGGCATGA
AA sequence Show only first row Show all	>Lus10023464 pacid=23160583 polypeptide=Lus10023464 locus=Lus10023464.g ID=Lus10023464.BGIv1.0 annot-version=v1.0 MDRSTSDKDKPSKRYRDERDRDSGRDHHDREHKHRSREKDRDSTSHHHHRSDRDDHNRDRHHHRKSSSKREDREGSRDRDIKRERSVDLRDDREGSRERV HERRKPGEREVKWEESYDGRENEEFDDVNRRKRKDREGSGDEREKKEARVSHVKRERRKFGDKVKEENDNDNGESARVTDNSNRGEFSEIKVKEEVIEEP IAGGSTVIAGIPALNGAASRSLAEPSSIAVSSVPSHLSLPSKVSSISNTNENKGVSVTRSHEVPGKSSTDGTSSIAGKSGSSSLDALAKAKKAIEMKKGI QQKLERLRMLNKANNSSSGGAKDGVKVPSSSAGVSATATPMGQTASGFPPIPGLNSIPNYEAVRRAQELAAKMGFRQDPEFGPLINLFPGQMQTEAAVPQ KPTKVPVLRVDALGREIDENGNVVNVTKPSNLSTLKVNINKQKKDAFQILKPELEVDPESNPHFDARMGIDKVKLLRPKRMSFQFVDEGKWSKDAESIKL RNQFGEERARDMKARQALHAKAKAAPDINPNLIEVGERAMTTKEKVKDPIPEIEWWDVPLVVGGAYGEYEDGIVEDNQLKMEKITIYAEHPCPIEPPAEP APPPPQPLKLTKKEHKKLRTQRRLAKEKDKQELIRQGLLEPPKPKVKLSNLMRVLGSEAVQDPTKLEKQVRNDAAEREQAHIDRNIARKLTPSEVSEKKK RKLFNDKNTVGTMVSVYRVNDLSHKKTRFRVDANAGENQLSGCCAITEGFSVVVVEGGSKSIKRYGNLMLRRINWAEAVNDEEEEGGGGGDDMPPNKCVL VWQGIVAKPSFHRFSVHECMTDAAARKIFADAGVVQYWDLAVNFSDDMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	0	1
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10040340 [exp]	1.0	0.8175
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	1.7	0.7674
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	2.0	0.7836
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	19.8	0.7004
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	28.3	0.6812
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	28.4	0.7521
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	30.6	0.6487
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	36.0	0.7440
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	54.2	0.6040
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10028101 [exp]	73.7	0.6654

Compare expression of checked genes

Lus10023464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.