Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55090 988 / 0 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 985 / 0 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT2G37360 946 / 0 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT5G13580 934 / 0 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G53510 895 / 0 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT3G55110 833 / 0 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55130 813 / 0 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55100 786 / 0 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G13610 330 / 1e-102 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 308 / 3e-95 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025281 [exp] 926 / 0 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 639 / 0 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10001972 [exp] 468 / 7e-162 AT5G13580 430 / 7e-148 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10030307 [exp] 451 / 6e-154 AT2G37360 366 / 9e-122 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 298 / 7e-91 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 288 / 3e-87 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 286 / 5e-86 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 285 / 6e-86 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 287 / 7e-86 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047900 [exp] 1135 / 0 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 1132 / 0 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 1019 / 0 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 983 / 0 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 958 / 0 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 330 / 2e-103 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 327 / 6e-102 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 326 / 1e-101 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 323 / 5e-100 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 323 / 7e-100 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023465 pacid=23160470 polypeptide=Lus10023465 locus=Lus10023465.g ID=Lus10023465.BGIv1.0 annot-version=v1.0 ATGTCACGCGTTCTTGCTGAATATCCCTCACCCAATCGTGACACAATTCCATTTCGCTCTCACCCTGGAGATATGGAGCTTACTGATCATCAACCCCCGC CGCCTGCAACCTCCCGACGAGGAGCTTTAGGCCTTTCTCCGACTCTCGGCCAGCTTCTGAAGCGCGTTGGTGATGTTAGGAAGGAAGCTACCGGCGACGG AAGCGAAACTCCCGTCCATCAGGTGCTCGAGCTTGGCGATTCTAATCCGGAAGTTCCCCGATCCATCCCGTTCGTTCTGTCTTTCAGTAATCTCACTTAC AGCGTTCGCGTCCGCCGCAAGCTGAGGATTCCGGATTTGCTTCCGGTTCGCCGGAACAGACTTGGACCGACGGCAACCGCCACTGATCCTGTCGCCGGGG AGAGCTTGAGCTTGTTCACCACGACGAAGACGCTTCTCAATGATATCTCCGGAGAAGCACGTGACGGGGAGATTTTGGCTGTTCTCGGGGCAAGTGGCTC CGGGAAATCGACTCTGATCGATGCTCTGGCGAATCGAATTGCAAAAGATTCGTTGAAAGGGACGGTGAATTTAAACGGCGAGGTCCTTGAATCTAGGATG CTGAAAGTGATTTCTGCTTACGTGATGCAGGACGACTTGCTGTACCCGATGCTGACGGTTGAAGAGACGCTGATGTACGCGGCGGAGTTCCGGCTCCCGA GGACTCTGTCCACGTCGAAGAAGAAGGCTCGAGTCCAGGCGCTGATCGACCAGCTTGGACTCCGGAACGCTGCGAAAACGGTCATCGGAGACGAAGGCCA CCGGGGAGTCTCCGGCGGAGAGCGCCGACGCGTGTCGATCGGAATCGACATAATCCACGACCCGATCATCCTCTTCCTCGACGAGCCGACCTCCGGACTC GACTCCACCAGCGCTTTCATGGTGGTCAAAGTCCTCCAGCGACTCGCTCAGAGCGGCAGCATCGTCATCATGTCCGTACACCAGCCGAGCTACAGAATCT TGGGATTACTAGACCGATTGATTTTCCTCTCCCGCGGTCAAACAGTCTACAGCGGGGCCCCCACCCACCTACCGGATTTCTTCTCGGATTTCGGTCACCC GATACCCGAGTCCGAGAACCGAACAGAATTCGCACTAGATCTGATCCGAGAACTCGAAGGCTCCCCTGGAGGAACAAAATCCCTAGGCGAATTCAACAAA CAATGGCAAACAATGAAAAACTCCGGCGGAATCAATCACCATAACAACAACAACAACAACAACAACCGCCGCCAGATCTCACTCAAGGAAGCCATCTCCG CCAGCATCTCAAGAGGCAAACTCGTCTCCGGCGCAACAAACGACAACAACTCAACCTCCATGGTCCCAACCTTCGCAAACCCAATCTGGAAAGAAATGAC AGTCCTAGCAAACAGATCCATAAAAAACTCCCGCAGAATGCCGGAGATCTTCGGAGTCCGTCTCGGAGCAGTCCTCGTAACCGGATTCATCCTCGCCACA ATGTTCTGGCAGCTCGACAACTCCCCAAAAGGAGTCCAAGAGCGACTCGGATTCTTCGCCTTCGCCATGTCAACAACCTTCTACACCTGCGCCGACGCGC TCCCAGTCTTCCTCCAGGAGCGTTACATCTACCTCCGGGAAACGGCACACAACGCTTACAGAAGATCCTCATACGTCCTCTCCCACGCATTCGTCTCCCT CCCAGCACTAATCTTCCTCTCAATCACCTTCGCCGCGACGACGTTTTGGGCGGTCGGGTTAGACGGCGGGTTCTCGGGTTTCCTATTCTACTTCTTCATA ATCCTCGCTTCATTCTGGGCAGGGAATTCCTTCGTGACATTCCTATCCGGCGTCGTTCCGCACGTAATGCTAGGTTACACAATCGTGGTCGCTATCCTGG CTTATTTCTTACTCTTCAGCGGGTTTTTCATAACCCGGGATAGGATACCGGATTACTGGATATGGTTCCATTACATGTCGCTTGTGAAGTATCCATACGA GGCCGTTTTGCAGAATGAGTTTCAAAACCCGAACAAGTGCTTTGTGAGAGGGGTGCAGATATTTGACAACACACCGTTAGGTGGGTTTCCGACGGAGACG AAGCTGAGGATGCTGGGTAGTATAAGCTCGTCGATGGGGGTGAACATAACGGCGTCAACTTGTTTAACGACGGGTGCGGATATACTGAAGCAGCAAGGGA TCACGGATTTGAACCGATGGAACTGTTTGGTTGTTACGGTGGCTTGGGGGTTTCTGTTCAGGATTTTGTTTTACTTCGCTTTGTTACTAGGAGGTAAAAA CAAGAGGAGGTGA
AA sequence Show only first row Show all	>Lus10023465 pacid=23160470 polypeptide=Lus10023465 locus=Lus10023465.g ID=Lus10023465.BGIv1.0 annot-version=v1.0 MSRVLAEYPSPNRDTIPFRSHPGDMELTDHQPPPPATSRRGALGLSPTLGQLLKRVGDVRKEATGDGSETPVHQVLELGDSNPEVPRSIPFVLSFSNLTY SVRVRRKLRIPDLLPVRRNRLGPTATATDPVAGESLSLFTTTKTLLNDISGEARDGEILAVLGASGSGKSTLIDALANRIAKDSLKGTVNLNGEVLESRM LKVISAYVMQDDLLYPMLTVEETLMYAAEFRLPRTLSTSKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGL DSTSAFMVVKVLQRLAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGAPTHLPDFFSDFGHPIPESENRTEFALDLIRELEGSPGGTKSLGEFNK QWQTMKNSGGINHHNNNNNNNNRRQISLKEAISASISRGKLVSGATNDNNSTSMVPTFANPIWKEMTVLANRSIKNSRRMPEIFGVRLGAVLVTGFILAT MFWQLDNSPKGVQERLGFFAFAMSTTFYTCADALPVFLQERYIYLRETAHNAYRRSSYVLSHAFVSLPALIFLSITFAATTFWAVGLDGGFSGFLFYFFI ILASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPDYWIWFHYMSLVKYPYEAVLQNEFQNPNKCFVRGVQIFDNTPLGGFPTET KLRMLGSISSSMGVNITASTCLTTGADILKQQGITDLNRWNCLVVTVAWGFLFRILFYFALLLGGKNKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	1.4	0.9715
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	1.7	0.9659
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040341 [exp]	2.0	0.9598
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	2.8	0.9711
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Lus10001971 [exp]	4.4	0.9295
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	6.0	0.9432
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10030307 [exp]	6.3	0.9429
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	6.9	0.8793
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	8.1	0.9511
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	8.4	0.9489

Compare expression of checked genes

Lus10023465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.