Plant FIBer expression Database

Lus10023466 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07950 172 / 6e-56 MED22B Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
AT1G16430 171 / 1e-55 Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040343
[exp]
82 / 3e-20 AT1G16430 76 / 4e-18 Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G080700
[exp]
191 / 3e-63 AT1G07950 165 / 4e-53 Surfeit locus protein 5 subunit 22 of Mediator complex (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06179 Med22 Surfeit locus protein 5 subunit 22 of Mediator complex
Representative CDS sequence
>Lus10023466 pacid=23160589 polypeptide=Lus10023466 locus=Lus10023466.g ID=Lus10023466.BGIv1.0 annot-version=v1.0
ATGAACAAGGGTGCAGCCGGTGGTGCCGGAGGAGCAGGGAGCGGTCCCACGGCCGCCGCCGCCGCAGCTGCGGCCCAGAAGCAGAAAGCTTTGATGCAAA
GGCTGGAAACAGATATCGCCAGCATCGTCGATAACTTCACCCACCTCGTCAACGTTGCTAGGGTCAGTGAGCCACCGGTGAGGAATAACCAGGAGGCCTT
CATGATGGAAATGCGTGCTTCCAGAATGGTTCAGGCAGCCGATTCACTGCTTAAGTTGGTATCCGACTTAAAACAAACCGCAATCTTTTCTGGATTTGCA
TCTCTTACTGACCACGTGGACCAGAGAATAGCAGAATTCGACCAACAGGCGGAGAAAAGTGATAACATGTTAGCTAGAATTGCAGAGGAGGCAGCGGCTA
GTCTCAAAGAGCTCGAGTCTCATTACTACTCTTCGTCACAGAGAACAAACCAAAACCTGCAGACTTGA
AA sequence
>Lus10023466 pacid=23160589 polypeptide=Lus10023466 locus=Lus10023466.g ID=Lus10023466.BGIv1.0 annot-version=v1.0
MNKGAAGGAGGAGSGPTAAAAAAAAQKQKALMQRLETDIASIVDNFTHLVNVARVSEPPVRNNQEAFMMEMRASRMVQAADSLLKLVSDLKQTAIFSGFA
SLTDHVDQRIAEFDQQAEKSDNMLARIAEEAAASLKELESHYYSSSQRTNQNLQT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G07950 MED22B Surfeit locus protein 5 subuni... Lus10023466
[exp]
0 1
AT5G02530 RNA-binding (RRM/RBD/RNP motif... Lus10040851
[exp]
1.4 0.8966
AT3G09860 unknown protein Lus10001400
[exp]
3.2 0.8807
AT1G76860 Small nuclear ribonucleoprotei... Lus10026326
[exp]
3.5 0.8720
AT1G73450 Protein kinase superfamily pro... Lus10031328
[exp]
3.9 0.8337
AT2G21950 SKIP6 SKP1 interacting partner 6 (.1... Lus10030606
[exp]
4.2 0.8286
AT2G25180 GARP ARR12 response regulator 12 (.1) Lus10005340
[exp]
6.0 0.8550
AT4G30220 RUXF small nuclear ribonucleoprotei... Lus10037606
[exp]
6.3 0.8668
AT1G11240 unknown protein Lus10018438
[exp]
6.5 0.8653
AT5G20510 Alfin AL5 alfin-like 5 (.1) Lus10037655
[exp]
7.2 0.8716
AT5G20510 Alfin AL5 alfin-like 5 (.1) Lus10015637
[exp]
7.9 0.8615

Lus10023466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.