Plant FIBer expression Database

Lus10023467 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12345 40 / 9e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040344
[exp]
56 / 3e-10 AT3G12345 167 / 9e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G213600
[exp]
48 / 2e-07 AT3G12345 144 / 8e-44 unknown protein
Potri.008G047800
[exp]
47 / 3e-07 AT3G12345 143 / 3e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10023467 pacid=23160467 polypeptide=Lus10023467 locus=Lus10023467.g ID=Lus10023467.BGIv1.0 annot-version=v1.0
ATGGCATCGCTACCAGCCCCGCCGTCTCTGCAGCTCTCAACAACGACAACCACCGCCACTCTGCTATTCGCTTCTCCACGCTCCTCCTCCACCTTTTCGA
TCAAGCACCGTCAGCACACCTCCGCCGCCCGCGCTACCGCCGATGACGAGTCATCCTCCTCCGCCTCCCAGCCGGAGTCGACCTCATCGGAGGCTCCCGA
TTCGGCCTCCAACGATCCCTTCGAATCGCGCCTCTCGAGTTTCCGTCTCAGGTACCGAGCAGGAGCGGGTAAGAAGGCGGAGATGCGGAAGGCTAGGAAG
AAAGGAGCCGTGGCAGCGGCGGCGGCGGGCGGGGGGCGGCCCCCAAAGGAGCCGTGGCAGCGGCGGCGTCGGGATCGAGTCTCTACCTGCCTCCGGTTCC
GCTGA
AA sequence
>Lus10023467 pacid=23160467 polypeptide=Lus10023467 locus=Lus10023467.g ID=Lus10023467.BGIv1.0 annot-version=v1.0
MASLPAPPSLQLSTTTTTATLLFASPRSSSTFSIKHRQHTSAARATADDESSSSASQPESTSSEAPDSASNDPFESRLSSFRLRYRAGAGKKAEMRKARK
KGAVAAAAAGGGRPPKEPWQRRRRDRVSTCLRFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12345 unknown protein Lus10023467
[exp]
0 1
AT3G44020 thylakoid lumenal P17.1 protei... Lus10019382
[exp]
4.5 0.9222
AT1G51110 Plastid-lipid associated prote... Lus10010444
[exp]
6.2 0.9257
AT1G13820 alpha/beta-Hydrolases superfam... Lus10037072
[exp]
7.2 0.9033
AT5G62840 Phosphoglycerate mutase family... Lus10007865
[exp]
8.2 0.9197
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Lus10022846
[exp]
11.2 0.9208
AT3G46780 PTAC16 plastid transcriptionally acti... Lus10040768
[exp]
16.4 0.9192
AT4G01150 unknown protein Lus10012645
[exp]
19.6 0.9177
AT4G39710 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex... Lus10022507
[exp]
20.0 0.9176
AT1G32220 NAD(P)-binding Rossmann-fold s... Lus10012126
[exp]
20.9 0.8982
AT3G01440 PnsL3, PQL2, PQ... PsbQ-like 2, Photosynthetic ND... Lus10035839
[exp]
22.4 0.9094

Lus10023467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.