Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55080 204 / 4e-64 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040345 [exp] 322 / 2e-108 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10012309 [exp] 41 / 0.0007 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047400 [exp] 216 / 4e-67 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.014G169300 [exp] 41 / 0.0006 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023469 pacid=23160488 polypeptide=Lus10023469 locus=Lus10023469.g ID=Lus10023469.BGIv1.0 annot-version=v1.0 ATGCTGCTACACACTTCATGCAAGTTTCGACGGCAGCTCCTCACCGTCTCTCGTCGTTTCTCCACCACATTCAACTTATCTTCCTCCCGGTCACAAGCCA CGATACTCTGGAGTGAACATGAGTTGGATATGGTTCGTGCAAGTTCTGTATATGAGGAAACCGTCAAACAAAAAGCTCAAATTGGGAATGATTTCTTAAA GATTGGACTAGTACGAATCAGTTACGGGAAGTTTGGAAATGCTACACTTATGTTGAACTTCGGGTTCACCATTCCACACAATATTCATGATCAGGTGGAG ATCCAGATGAGTATATCTGACAGTGATGTTTTGCATGAAATGAAGAAAGAGATTTTGCTAAGACATCAGCTGCGAACAATTCGAGGTCCACATGATGCCG AGCCACCTTCTTGGAATTTTTTCACAATCAGGGAAGTGAAGTCAGGTACAGGGAAAGGGAAGGGCATTCCACAATCGCTCCGTGCATTTGCTCGTGTTGT GAGTTGTAATCATCCCATAGATATATACGATCTAGCTTCTGAAGCTGCACAGAATGATGGTCGTCTGGCAAGGCGTCCCTTCAAAGATAGTAATGGAGAG ATCCAAGCTCACAGCATCGTGCTATCGCACATTATCCGACTGATTGATCAATACCGTGCATCAATTCAGACCATTGGAGTTGGCCTCCAACCTTCTCAGC TGGCCTCCAACCTTCTCGCTGGCGAGCTCCGCATTCTTGAATCTGCTTCAGCTTGGCTTCGGAACTACTGCGCAACTCTGTCGGAGAAAGATGGATTAAA AGAGAATAAGAGATGA
AA sequence Show only first row Show all	>Lus10023469 pacid=23160488 polypeptide=Lus10023469 locus=Lus10023469.g ID=Lus10023469.BGIv1.0 annot-version=v1.0 MLLHTSCKFRRQLLTVSRRFSTTFNLSSSRSQATILWSEHELDMVRASSVYEETVKQKAQIGNDFLKIGLVRISYGKFGNATLMLNFGFTIPHNIHDQVE IQMSISDSDVLHEMKKEILLRHQLRTIRGPHDAEPPSWNFFTIREVKSGTGKGKGIPQSLRAFARVVSCNHPIDIYDLASEAAQNDGRLARRPFKDSNGE IQAHSIVLSHIIRLIDQYRASIQTIGVGLQPSQLASNLLAGELRILESASAWLRNYCATLSEKDGLKENKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55080			SET domain-containing protein ...		Lus10023469 [exp]	0	1
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	3.7	0.8236
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	10.5	0.8130
AT3G14880			unknown protein		Lus10039193 [exp]	16.4	0.7659
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	23.2	0.7808
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	28.6	0.7576
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10008724 [exp]	29.7	0.7230
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	32.2	0.7641
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	34.4	0.7703
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	37.9	0.7429
					Lus10015620 [exp]	50.4	0.7461

Compare expression of checked genes

Lus10023469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.