Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 557 / 0 Protein phosphatase 2C family protein (.1.2) AT3G55050 538 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 485 / 3e-172 Protein phosphatase 2C family protein (.1.2) AT4G38520 481 / 4e-170 Protein phosphatase 2C family protein (.1.2) AT5G66080 463 / 2e-163 Protein phosphatase 2C family protein (.1) AT5G02760 442 / 2e-155 Protein phosphatase 2C family protein (.1) AT3G17090 374 / 3e-128 Protein phosphatase 2C family protein (.1.2) AT5G06750 347 / 1e-117 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 344 / 9e-117 Protein phosphatase 2C family protein (.1) AT3G16560 144 / 1e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040346 [exp] 686 / 0 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 637 / 0 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10001976 [exp] 572 / 0 AT3G12620 524 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 497 / 8e-177 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 487 / 1e-172 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 482 / 1e-170 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 465 / 5e-164 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 465 / 6e-164 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 450 / 2e-158 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214700 [exp] 588 / 0 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 587 / 0 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 516 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 507 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 501 / 2e-178 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 498 / 7e-177 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 484 / 6e-172 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 399 / 2e-138 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 394 / 2e-136 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 367 / 1e-125 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10023470 pacid=23160468 polypeptide=Lus10023470 locus=Lus10023470.g ID=Lus10023470.BGIv1.0 annot-version=v1.0 ATGAAAATCGTTGCAAACTGCTGGAGGCCTTCGGTGGAAGGAGAATCTAATAGAGGTGGAGAAGCTACCGGCCGTGTTGATGGATTGCTGTGGTACAAAG ATTTCGGGCGGCATGTGAATGGGGAATTCTCTATGGCGGTAATTCAAGCTAACAATCTGCTAGAAGACCAAAGCCAAGTCGAGTCCGGGCCTATGAGTTC GCACGAATCAGGTCCTCAAGGTACATTTGTGGGAGTTTATGACGGCCATGGAGGTCCAGAAGCTGCCCGGTTCGTAAACGAACGCCTTTTCGACAATGTT AAGAGATTTACATCCGAGAGTCATGGGATGTCGAATGATGTGATTACGAAAGCCTTTCTGGCTACAGACGAGGAGTTTCTTACTCTAGTGAAGGACCAAT GGATGTATAAGCCACAGATTGCTTCTGTGGGAGCCTGTTGTTTAGTAGGAATAATATGCAGTGGACTTCTCTACATTGCCAACGCTGGTGATTCTCGGGC GGTATTAGGAAGACTGGAGAATACCATGAAGGAAGTTAAGGCCATTCAGTTGTCTTCTGAACACAATGCCAGTATAGAATCTGTGAGAGAGGAGTTGCAT TCGTTGCATCCCGATGATCCTCAGATTGTAGTTCTAAAACACAACGTTTGGCGCGTAAAGGGCCTGATCCAGGTCTCGAGATCGCTTGGGGATGCATACC TCAAGAGAGCAGAATTCAACAGAGAGCCACTGTTGGCGAAATTCAGACTGCCCAATCCGTTCGAAAATCCGATCCTTTTGGCTGAGCCTACAATCACAGT GCAGAGATTGGTTCCCGAGGATCAGTTCCTAATATTCGCATCGGATGGCTTGTGGGAGCACCTGACCAACCAGGAGGCTGTCGATATTGTTCATAACTGT CCTCGTAACGGTGTGGCGAGGAAGCTCCTGAAGGCTGCACTCCACGAAGCGGCAAAGAAGAGGGAAATGAGATACTCGGACTTGAAGAAGATCGACCGAG GAGTTAGGAGACATTTCCACGATGACATCACCGTCATAGTTCTGTTTCTGGATTCACATATGATCAGCCGCAGCTCGTGCAGAAGTCCTCGGGTTTCGGT TAGAGGTGGAGGTGGTATGGCTGGACGCAGTGCCAGTGCGACCTTTTGA
AA sequence Show only first row Show all	>Lus10023470 pacid=23160468 polypeptide=Lus10023470 locus=Lus10023470.g ID=Lus10023470.BGIv1.0 annot-version=v1.0 MKIVANCWRPSVEGESNRGGEATGRVDGLLWYKDFGRHVNGEFSMAVIQANNLLEDQSQVESGPMSSHESGPQGTFVGVYDGHGGPEAARFVNERLFDNV KRFTSESHGMSNDVITKAFLATDEEFLTLVKDQWMYKPQIASVGACCLVGIICSGLLYIANAGDSRAVLGRLENTMKEVKAIQLSSEHNASIESVREELH SLHPDDPQIVVLKHNVWRVKGLIQVSRSLGDAYLKRAEFNREPLLAKFRLPNPFENPILLAEPTITVQRLVPEDQFLIFASDGLWEHLTNQEAVDIVHNC PRNGVARKLLKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVLFLDSHMISRSSCRSPRVSVRGGGGMAGRSASATF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	1.0	0.8597
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	2.4	0.8308
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	2.8	0.8360
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	4.5	0.8260
					Lus10021578 [exp]	9.2	0.7912
					Lus10005785 [exp]	14.3	0.7932
AT4G18490			unknown protein		Lus10021779 [exp]	15.1	0.8140
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10001044 [exp]	15.2	0.7799
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	15.7	0.7816
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	18.7	0.7930

Compare expression of checked genes

Lus10023470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.