Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39290 301 / 3e-101 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1) AT3G55030 281 / 5e-94 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1) AT4G04870 57 / 6e-09 CLS cardiolipin synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040348 [exp] 456 / 5e-160 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1) Lus10030301 [exp] 301 / 3e-102 AT2G39290 311 / 2e-107 phosphatidylglycerolphosphate synthase 1 (.1) Lus10001977 [exp] 301 / 8e-102 AT2G39290 310 / 1e-106 phosphatidylglycerolphosphate synthase 1 (.1) Lus10007662 [exp] 52 / 2e-07 AT4G04870 304 / 1e-103 cardiolipin synthase (.1) Lus10018349 [exp] 52 / 5e-07 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214900 [exp] 316 / 9e-108 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.008G046700 [exp] 296 / 2e-98 AT3G55030 316 / 5e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.004G018300 [exp] 57 / 6e-09 AT4G04870 351 / 1e-120 cardiolipin synthase (.1) Potri.004G175600 [exp] 40 / 0.001 AT1G68000 358 / 7e-127 phosphatidylinositol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Lus10023471 pacid=23160562 polypeptide=Lus10023471 locus=Lus10023471.g ID=Lus10023471.BGIv1.0 annot-version=v1.0 ATGCCTGCCCTCAAATTGAGCATGTCCGTTGCTTCCTTCTCCTCCAAACCTTACAAATGGCCTCGCTCCTTCCTTCTCTCCCCTTCTTCTTCTTCTTCTT CTTCCCCCTCCTCCGCCGTCGCCTCCGTTCATCTCCGCCATCCATCCCCTTTCTCCTCCGCCTCCGCAGAGCCTGTGGTCTCAGTCGATAGCAGAGCGTG GCGCAGGATACCAACCTGCGCACACCACCGCGCTCCTTTTAATGATTACCGGTACCCAATTTTCAGCTGTAGCAGTAACAAAAACGATAAAAGTAAAAAT AAATTCAGCTCGTTATTAAGGCTCCCTTCTTCTTCGTCTTCTCCTTTTTCTTCCTCGTCCCGTGGAAACAACAGTGGCTCGTCCTTGTCTGCTTCTCCCA AATCTTCCGGATTCTCCGGATCGGATTCTTCCTCCGGTGCCGTGATCGCGGAAGAAGATATGGGATCCGATAATAAGATCGTCGACGGCGTTAACGGATC GGTTCAACCGCACCAGAAACAGGGCTGCTCGACGAAATTTCTCACCTTGCCTACGATTCTAACCCTCGGGAGAGTTGCCGCCGTGCCGCTTCTTATCGCC ACCTTTTACGTGGATAGTTGGTTGGGAAGAACTGCTACAACCAGCATTTTCATTGCAGCCGCAATTACTGATTGGCTTGATGGATACCTAGCACGGAAGA TGAAGTTAGGTTCTGCTTTTGGTGCCTTTCTAGATCCCGTAGCCGACAAGCTTATGGTTGCTGCTACATTGGTAATGCTGTGTACTAAGCCCCTGGAAGT TTCAATGCTTGGACCGGTGCCATGGCTACTCACGGTGCCTTCAATTGCTATTATTGGTCGGGAGATAACAATGTCTGCATTAAGAGAATGGGCTGCTTCA CAAGATGCAAAGCTTCTAGAGGCTGTTGCTGTAAATAACTTAGGGAAATGGAAAACTGCCACACAGATGACAGCATTAACCATCCTGCTGGCTAGCCGAG ATGGAGGCGCTGGAGGGCCAGGGGTGTTTGTTGCATCTGGTGTTGTTTTGCTTTATATCTCAGCCGGTCTCTCCGTTTATTCATTAGCTGTGTACATGAG TAAGATATGGAAAGTGCTGCTCAAGTAA
AA sequence Show only first row Show all	>Lus10023471 pacid=23160562 polypeptide=Lus10023471 locus=Lus10023471.g ID=Lus10023471.BGIv1.0 annot-version=v1.0 MPALKLSMSVASFSSKPYKWPRSFLLSPSSSSSSSPSSAVASVHLRHPSPFSSASAEPVVSVDSRAWRRIPTCAHHRAPFNDYRYPIFSCSSNKNDKSKN KFSSLLRLPSSSSSPFSSSSRGNNSGSSLSASPKSSGFSGSDSSSGAVIAEEDMGSDNKIVDGVNGSVQPHQKQGCSTKFLTLPTILTLGRVAAVPLLIA TFYVDSWLGRTATTSIFIAAAITDWLDGYLARKMKLGSAFGAFLDPVADKLMVAATLVMLCTKPLEVSMLGPVPWLLTVPSIAIIGREITMSALREWAAS QDAKLLEAVAVNNLGKWKTATQMTALTILLASRDGGAGGPGVFVASGVVLLYISAGLSVYSLAVYMSKIWKVLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	1.0	0.9060
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	2.4	0.8372
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	2.6	0.7988
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	3.2	0.8634
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	5.0	0.8186
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	8.0	0.8339
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	8.5	0.8011
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	12.4	0.7840
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	12.8	0.7549
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	13.6	0.7693

Compare expression of checked genes

Lus10023471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.