Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55020 824 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 771 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 639 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 159 / 3e-42 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 100 / 2e-22 PAM1 plant adhesion molecule 1 (.1) AT3G02460 93 / 4e-20 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 61 / 2e-09 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 55 / 2e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 55 / 2e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 49 / 1e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040349 [exp] 1415 / 0 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10041425 [exp] 1014 / 0 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10014020 [exp] 630 / 0 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036500 [exp] 628 / 0 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10036501 [exp] 179 / 1e-50 AT3G55020 141 / 2e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012363 [exp] 167 / 5e-45 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 166 / 8e-45 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 98 / 1e-21 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 96 / 7e-21 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 951 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 949 / 0 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G133400 [exp] 701 / 0 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 161 / 4e-43 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 159 / 2e-42 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 96 / 7e-21 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 92 / 7e-20 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 52 / 1e-06 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 50 / 8e-06 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 49 / 1e-05 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10023472 pacid=23160571 polypeptide=Lus10023472 locus=Lus10023472.g ID=Lus10023472.BGIv1.0 annot-version=v1.0 ATGTCGGTCTCTGTGGACAGGGATGCATATGGATTTGCAGTCAGGCAACAGCATGTACAGAGATACAGAGAGTATGCTAATATCTATAAGGAGGAAGAGG AGGAAAGGTCAGACAGATGGGAAAGTTTCTTGGACAGGTTGGGCAAACCTGCTCGCCTGCCTATAAATGGGTCTTCTGTGGAAGAAAGTAGGACATTAAG TGGTGAAGCAACAGATAACGGTTTGAGTGACGGGAACAATAGTTCTGATGTTTCACATGATGACCTTACTGAGGAATGGAAACAGTCCAAAGCTAATAGA AGAATACATAGAATCCAAATTTGGACAGAGACTAGGCCAGCACTTCGAGCCATTGAAGATATGATGAATGTCCGTGTCAAAAACAAGGCCAAACAATTGA TGGAAGAACACAGTAATATGGGCGAAAAGTCAGATTCTACAGTTAAAGGTATTACCTCAGAAAAACGAGTGACTGAGGAAGATTCCGAGGATGAGTTTTA CGATGTGGAGCGGTCAGACGATCCAATACCCGATGTTCTTCCAGTTGAGAATGTTGCGGCATCAGTAACAGGTGCTACTGATGCTGATGCGGTCCTTCAA GAAGATTCGTTTTGGAAAGAAGAATTGGAGGTCCTTGTCCGTGGAGGAGTACCAATGGCACTCAGAGGGGAGCTCTGGCAAGCATTTGCAGGTGTCAAGG CCCGACGAATGGATAAGTATTATCAACACCTTCTTGCTTCAGAAACTTGTTCACAAAATCATGCTGATGAAAAATCAGAAGACGGTCCTAAAAGTTCACC AAGAAACCTTGCACCTGGAGCTGAAAAATGGAAGGGACAGATTGAGAAGGATTTGCCCCGTACTTTTCCTGGCCATCCTGCCCTGGATATTGATGGCAGA AATGCTCTTCGGCGGATACTTACAGCCTATGCACGGCATAACCCCTCAGTTGGATACTGCCAGGCCATGAATTTCTTTGCTGCTCTTTTACTACTTCTGA TGCCGAAGGAAAATGCCTTCTGGACATTCATGGGCATTCTTGATGATTATTTTGACGGGTACTACTCAGAAGAAATGATAGAGTATGAGGTTGACCAACT TGTTTTTGAAGAGCTTGTGCGTGACAGATTTCCTAAACTAGCCAACCATCTGGACTACTTAGGAGTGCAGGTTTCATCCTTTTCTGGACAATGGTTCCTT TCCATATATATGAATATGCTTCCCTGGGAAAGTGTTCTTCGTGTCTGGGACGTGCTTCTTTTTGAAGGAAACCGTGTCATGCTATTTTGGACAGCACTTG CTTTGATGGAGTTATATGGTCCTGCATTAGTTACAACCAAGGATGCTGGAGATGCAAATACTTTACTGCGGTCACTGGCAGATTCAACATTCGATAGCAG TCAACTTGTATTGACAGCTTGTATGGGTTTCCAAAATGTAAATGAAACACGATTATGGGAGTTGAGAAATAAGCATCGACCAGCTGTTATGGCTGCACGT GAAGAGAGAACCAAGGGACTTCAAGCTTCAATGAATCGTCAGGGATTGCCTTCAAAACTGTGTCATTTCAAATTAGATTCCAAGTCAGTGCTGGTAGAAG GAAGAAGGCAAACCAGCAGTGACTTCTCTCACTCAGAGACCGAGTCTACTAATTCTGATGATGCTTTTGCCACTCTGATAGAGAATGGAGAGATGGATAG TACTCCAGATCTTCAAGATCAGGTGGTGTGGTTAAAGGTTGAATTAGGCAAGTTACTGGATGAGAAAAGCTCTGCTCTACTGAGAGCCGAGGAATTGGAG ATGGCTTTGATGGAGATGATTATGCATGATAATCGACGGCAACTGAGTGCTAGGGTCGAGCAGTTGGAACAGGATGCTTTGGAGTTGCGCAAGGCACTAG ATGAAAAGCAGGAGCAGGAAAATTCCATGATTCAGGTCTTAATGAGGGCGGAGCAAGAACACAGAGTAACAGAAGATGCTCGTAGATATGCAGAGCAAGA TGCATCTGCTCAAAGATATGCTTGCCAAGTGCTTCAGGACAAATATGAAGAGGCTATGGCATCACTTGCTGAAATGGAGAAACGAGTAGTTGTTGCCGAA TCAGTTTTGGAGGCTACCTTGCAATACCAGTCCGGTCAACTGAAAACACAGTCTTCTCCCAGAGTTCAAAACCCAGACAGATTGCAACGCAGCAACAGCA ATCAAGACACACCTTCACCGACAAGAAAGTCCGGATTATTTGGCCTTGGCTGGCGCGACAAAAACAAGGGCCTGTTCGGTGGATCAAAAGGTGTCTTTGC TAATCCGGTCAGACAATCCACTGTCGCTGCAGGACAGGTGTTTGGTAGAAAAGGCAATGGTGAAGAAGAATGCAGGAATGGGAAGCATACACCGAACGAC AACCAGACGACTCCTCCATCTTTCGACCAAAGTTAA
AA sequence Show only first row Show all	>Lus10023472 pacid=23160571 polypeptide=Lus10023472 locus=Lus10023472.g ID=Lus10023472.BGIv1.0 annot-version=v1.0 MSVSVDRDAYGFAVRQQHVQRYREYANIYKEEEEERSDRWESFLDRLGKPARLPINGSSVEESRTLSGEATDNGLSDGNNSSDVSHDDLTEEWKQSKANR RIHRIQIWTETRPALRAIEDMMNVRVKNKAKQLMEEHSNMGEKSDSTVKGITSEKRVTEEDSEDEFYDVERSDDPIPDVLPVENVAASVTGATDADAVLQ EDSFWKEELEVLVRGGVPMALRGELWQAFAGVKARRMDKYYQHLLASETCSQNHADEKSEDGPKSSPRNLAPGAEKWKGQIEKDLPRTFPGHPALDIDGR NALRRILTAYARHNPSVGYCQAMNFFAALLLLLMPKENAFWTFMGILDDYFDGYYSEEMIEYEVDQLVFEELVRDRFPKLANHLDYLGVQVSSFSGQWFL SIYMNMLPWESVLRVWDVLLFEGNRVMLFWTALALMELYGPALVTTKDAGDANTLLRSLADSTFDSSQLVLTACMGFQNVNETRLWELRNKHRPAVMAAR EERTKGLQASMNRQGLPSKLCHFKLDSKSVLVEGRRQTSSDFSHSETESTNSDDAFATLIENGEMDSTPDLQDQVVWLKVELGKLLDEKSSALLRAEELE MALMEMIMHDNRRQLSARVEQLEQDALELRKALDEKQEQENSMIQVLMRAEQEHRVTEDARRYAEQDASAQRYACQVLQDKYEEAMASLAEMEKRVVVAE SVLEATLQYQSGQLKTQSSPRVQNPDRLQRSNSNQDTPSPTRKSGLFGLGWRDKNKGLFGGSKGVFANPVRQSTVAAGQVFGRKGNGEEECRNGKHTPND NQTTPPSFDQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	1.7	0.7880
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	4.0	0.7648
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	6.0	0.7320
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	7.9	0.7436
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	11.5	0.7696
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	15.0	0.7504
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	16.9	0.7779
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	19.7	0.6718
AT1G04200			unknown protein		Lus10039377 [exp]	25.1	0.7308
AT3G57200			unknown protein		Lus10042032 [exp]	25.4	0.7047

Compare expression of checked genes

Lus10023472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.