Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 535 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 522 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 505 / 9e-179 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 482 / 4e-170 Protein kinase superfamily protein (.1.2) AT2G28590 472 / 3e-166 Protein kinase superfamily protein (.1) AT3G20530 449 / 6e-158 Protein kinase superfamily protein (.1) AT3G07070 440 / 9e-154 Protein kinase superfamily protein (.1) AT3G24790 435 / 1e-152 Protein kinase superfamily protein (.1) AT1G20650 425 / 3e-148 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 419 / 5e-146 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040350 [exp] 730 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 604 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 601 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 539 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 539 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 512 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 508 / 5e-180 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10015756 [exp] 502 / 3e-177 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 454 / 5e-159 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215100 [exp] 581 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 567 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 542 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 535 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 534 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 509 / 3e-180 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 503 / 5e-178 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 491 / 6e-174 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 481 / 7e-170 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 457 / 3e-161 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023473 pacid=23160541 polypeptide=Lus10023473 locus=Lus10023473.g ID=Lus10023473.BGIv1.0 annot-version=v1.0 ATGGAATGGTTTATCTGTGGTGGCAAGCCAAGCAAAAATTCCAAGAAACTCCCCAGGAAACCCCCTGACGATTCCAATGGAACCAAACACCAGCAGCAGA AGAAGAATCCGCCTGATGATCAGATCCCTTCTTCGTCAGATAAAATAAAGCCAAATGATGCTCAAGAGGCATATAAGGAGCTTACTCCTCAGGAGAAAGG AGTATCAGATCCTATCTCGGCAAATACATTCACATTCCGCGAGTTGGCCGCTGCAACTAAGAATTTCAGAGCAGATTGTCATTTGGGTGAAGGAGGTTTT GGCCGAGTGTATAAAGGGAGTTTAGAGAGCATTAATCGGGTTGTTGCTATCAAGCAACTTGATCGGAATGGCCTGCAAGGAAATCGAGAATTCTTGGTTG AAGTATTGATGTTGAGCCTACTTCATCATGATAACCTAGTGAACTTGATTGGCTATTGTGCCGATGGAGACCAGAGGCTCTTGGTATATGAGTACATGCC TTTAGGATCTTTGGAAGACCATTTACTCGACCTGCCGATTGATAAAAAGCCGCTCGACTGGAACACGAGAATGAAAATAGCTGCTGGTGCAGCCAAAGGT CTGGAGTATTTGCACGACAAGGCTAATCCACCAGTTATATACCGGGATCTGAAATGCTCAAACATATTACTCGATGAAGGGTTTCACCCAAAGCTGTCTG ATTTCGGGTTGGCGAAACTGGGGCCCGTTGGGGACAAAACACATGTTTCGACTAGAGTGATGGGTACGTATGGGTACTGTGCACCGGAGTATGCAATGAC GGGTCAGCTAACACTGAAATCAGATATATATAGCTTTGGTGTTGTTCTTCTTGAGATTATTACTGGAAGGAAAGCTATTGACAACTCGAGAGCTGCAGGG GAGCATAATCTGGTTGCATGGGCCAGGCCGTTGTTCAAGGACCGTAAGATGTTTGCACAGATGGCGGACCCGACACTTCAGGGGCATTACCCAGTAAGGG GATTGTATCAAGCTCTAGCGGTAGCAGCAATGTGCGTCCAAGAACAGCCGAATATGAGACCTTTAGTAGCCGATGTGGTTACGGCTCTTACGTACCTTGC GTCACAGAAGTATGATCCGTCAGAGAATCAGGCAGCCCGTGCAGGAGGAGGACGAGGACCGGCTACACCTAGAGCTAGAAGGTGA
AA sequence Show only first row Show all	>Lus10023473 pacid=23160541 polypeptide=Lus10023473 locus=Lus10023473.g ID=Lus10023473.BGIv1.0 annot-version=v1.0 MEWFICGGKPSKNSKKLPRKPPDDSNGTKHQQQKKNPPDDQIPSSSDKIKPNDAQEAYKELTPQEKGVSDPISANTFTFRELAAATKNFRADCHLGEGGF GRVYKGSLESINRVVAIKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPIDKKPLDWNTRMKIAAGAAKG LEYLHDKANPPVIYRDLKCSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDIYSFGVVLLEIITGRKAIDNSRAAG EHNLVAWARPLFKDRKMFAQMADPTLQGHYPVRGLYQALAVAAMCVQEQPNMRPLVADVVTALTYLASQKYDPSENQAARAGGGRGPATPRARR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10023473 [exp]	0	1
AT4G29960			unknown protein		Lus10001629 [exp]	6.2	0.8738
AT1G31940			unknown protein		Lus10012117 [exp]	8.1	0.8662
AT5G45660			unknown protein		Lus10002778 [exp]	9.5	0.8389
AT1G08800			Protein of unknown function, D...		Lus10005527 [exp]	11.0	0.8022
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	11.2	0.8608
AT4G17250			unknown protein		Lus10028936 [exp]	12.0	0.8411
AT5G03670			unknown protein		Lus10023875 [exp]	12.6	0.7945
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	14.7	0.8353
					Lus10000816 [exp]	17.0	0.8147
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	17.4	0.8358

Compare expression of checked genes

Lus10023473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.