Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37250 400 / 1e-141 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 350 / 2e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 141 / 3e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G35170 119 / 5e-30 adenylate kinase family protein (.1.2) AT5G63400 110 / 2e-28 ADK1 adenylate kinase 1 (.1.2) AT5G50370 108 / 1e-27 Adenylate kinase family protein (.1) AT5G47840 101 / 8e-25 AMK2 adenosine monophosphate kinase (.1) AT4G25280 85 / 4e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G60180 82 / 2e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G26667 81 / 4e-18 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040358 [exp] 533 / 0 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10030296 [exp] 463 / 4e-166 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10001984 [exp] 462 / 8e-166 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10022342 [exp] 157 / 3e-46 AT3G01820 255 / 4e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032057 [exp] 155 / 2e-45 AT3G01820 244 / 5e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035224 [exp] 152 / 3e-44 AT3G01820 242 / 3e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036326 [exp] 115 / 1e-28 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10016757 [exp] 106 / 4e-27 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 103 / 5e-26 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046100 [exp] 441 / 1e-157 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 434 / 1e-154 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.001G333100 [exp] 149 / 4e-43 AT3G01820 249 / 8e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G093200 [exp] 132 / 9e-37 AT3G01820 227 / 3e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G113400 [exp] 114 / 3e-28 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.015G092800 [exp] 107 / 2e-27 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.012G095300 [exp] 106 / 3e-27 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.013G103400 [exp] 106 / 1e-26 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 100 / 2e-24 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.014G043300 [exp] 88 / 1e-20 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase CL0023 [flax] [poplar] PF05191 [flax] [poplar] ADK_lid Adenylate kinase, active site lid
Representative CDS sequence Show only first row Show all	>Lus10023476 pacid=23160507 polypeptide=Lus10023476 locus=Lus10023476.g ID=Lus10023476.BGIv1.0 annot-version=v1.0 ATGGCTGCCCTTCTCAAAATCTCCAAATCCGCATCGGCGCCATTGACAACAGCCTCCAGAGCTTTCGCTTCCTTCACCTCTCGTAGTTTCTCCGCTCTCA ATACAGAGCCCGACCTCGCCAGATCTCCTCCTCCCTCATCCTTCTTATCTCACAACAACAATTCCTTGCCTCTCCGTCAGGACCCCAAGGATAGGAACGT CCAGTGGGTGTTCCTCGGCTGCCCCGGCGTCGGGAAAGGAACTTACGCCTCCCGCTTGTCCACTCTCCTCGGCGTCCCTCATATCGCCACCGGGGATCTC GTCCGCGAAGAGCTCAATTCCTCCGGTCCCCTCGCCTCCCAGCTCAAGGAGATTGTGAATCAAGGGAAACTGGTTTCAGATGAAATCATAATAAACTTGT TATCTAAGCGTCTGGAAACAGGGGAAGCTAAGGGGGAATCTGGATTCATTCTTGATGGCTTTCCTCGTACAATTAGGCAAGCGGAAATATTGGAAGGAGT GACGGAAATGGATTTGGTGGTGAACCTAAAGCTGAGGGAAGAAGCGCTGCTTGCGAAATGTCTTGGTCGTAGGATATGCAGCCAGTGTGGTGGAAACTAC AATATTGCCTGCATAGACATCAAGGGGGAGAATGGAGAGCCTAGTATCTACATGGATCCTCTTCCTCCTCCTTCGCAATGTGCCGGCAAACTTATCCAAC GCGCTGACGACACTGAAGAAGTCGTTAAGGCGCGGTTAAGAATTTATAACGAAACGAGTCGGCCAGTGGAGGAATTCTACCGCAGCCGTGGGAAGTTGTT GGAGTTCAGTCTTCCAGGTGGGATCCCGGAATCGTGGCCGAAGCTGCTTGAAGCATTGAATCTCGATGATCAGGAAGTGAAACGCTCCGCAGCAGCTTGA
AA sequence Show only first row Show all	>Lus10023476 pacid=23160507 polypeptide=Lus10023476 locus=Lus10023476.g ID=Lus10023476.BGIv1.0 annot-version=v1.0 MAALLKISKSASAPLTTASRAFASFTSRSFSALNTEPDLARSPPPSSFLSHNNNSLPLRQDPKDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDL VREELNSSGPLASQLKEIVNQGKLVSDEIIINLLSKRLETGEAKGESGFILDGFPRTIRQAEILEGVTEMDLVVNLKLREEALLAKCLGRRICSQCGGNY NIACIDIKGENGEPSIYMDPLPPPSQCAGKLIQRADDTEEVVKARLRIYNETSRPVEEFYRSRGKLLEFSLPGGIPESWPKLLEALNLDDQEVKRSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	0	1
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	1.7	0.8510
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	3.7	0.8029
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10009288 [exp]	7.3	0.7511
AT1G75140			unknown protein		Lus10010815 [exp]	8.5	0.7895
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	9.5	0.7595
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	13.4	0.7478
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	13.9	0.7839
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	14.1	0.7654
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	17.5	0.7791
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10017612 [exp]	18.7	0.7603

Compare expression of checked genes

Lus10023476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.