Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55005 319 / 6e-111 TON1B tonneau 1b (TON1b) (.1) AT3G55000 310 / 1e-107 TON1A TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040360 [exp] 387 / 1e-137 AT3G55005 327 / 1e-113 tonneau 1b (TON1b) (.1) Lus10030297 [exp] 356 / 2e-125 AT3G55005 359 / 2e-126 tonneau 1b (TON1b) (.1) Lus10001983 [exp] 338 / 4e-118 AT3G55000 359 / 3e-126 TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046000 [exp] 357 / 4e-126 AT3G55005 370 / 1e-130 tonneau 1b (TON1b) (.1) Potri.010G215500 [exp] 354 / 9e-125 AT3G55005 357 / 2e-125 tonneau 1b (TON1b) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023478 pacid=23160637 polypeptide=Lus10023478 locus=Lus10023478.g ID=Lus10023478.BGIv1.0 annot-version=v1.0 ATGGACGACTATACGAGAGAGATGATGGACCTCAAGACCCTCGTCACTCGTACACTTGAGAAGAAAGGCGTTCTCGCCAAGATCCGGGCGGAACTCAGAG CAAGTGTGTTCGAAGCAATTGAAGAAGAAGATAAGGTGATTGAGAATGAACAAGACTTACCACCTGCATTACTTGGCAGCTGCAATGATCGTGCAAAGCA ACTCCATGCTTCACCATCAGGGAGGCTGTTAACTGCATTGATTTGCGAGTACTTGGACTGGGCACAACTGAATCATTCATTAAAAGTTTACCTTCCGGAG TGCAACTTGCAAAAGGATGCCTGGAAAGCCGAGTTGAATGAGTTCGGTAGTAAGAACAAATACGATCTCAACAGGAATGGAGATAGTGGTCCTTTGCTTC TGGATGTACTTGAAGGATTCTTGAAGTATGAGGATCTAACTCAAGCTAGGGGAAGCGGAAGGAGAGTTTCGGTGTCTGGTGCATCTTCTTCATCTGACAG GAGAGCAGGGTCCTCCATGAGTGGTGGCTACAGAAAAGACGAGTACAATTGGCGGTACGATGGTGACGAAGTCCCGGAGGATGTAAATCGAGCTTCGGTT GCACTTGAGAACCTCCAGTTGGACAGGAAGGCTAGGAATCTAACATCATCGTGGCGGCATGCCGGAGATGGGATGAGCGACGAGGATGGAAGGGTTGATC ATATTTGA
AA sequence Show only first row Show all	>Lus10023478 pacid=23160637 polypeptide=Lus10023478 locus=Lus10023478.g ID=Lus10023478.BGIv1.0 annot-version=v1.0 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDKVIENEQDLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHSLKVYLPE CNLQKDAWKAELNEFGSKNKYDLNRNGDSGPLLLDVLEGFLKYEDLTQARGSGRRVSVSGASSSSDRRAGSSMSGGYRKDEYNWRYDGDEVPEDVNRASV ALENLQLDRKARNLTSSWRHAGDGMSDEDGRVDHI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	0	1
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	1.4	0.9409
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10040360 [exp]	2.6	0.8885
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	2.8	0.9286
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	4.2	0.9247
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	6.0	0.9114
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10035785 [exp]	8.1	0.8700
AT4G35905			unknown protein		Lus10041873 [exp]	9.8	0.8908
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	11.0	0.8617
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	12.0	0.9087
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	12.2	0.8763

Compare expression of checked genes

Lus10023478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.