Plant FIBer expression Database

Lus10023479 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13520 550 / 0 peptidase M1 family protein (.1)
AT4G33090 53 / 4e-07 ATAPM1, APM1 aminopeptidase M1 (.1)
AT1G63770 45 / 8e-05 Peptidase M1 family protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040361
[exp]
671 / 0 AT5G13520 729 / 0.0 peptidase M1 family protein (.1)
Lus10026448
[exp]
55 / 1e-07 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1)
Lus10025001
[exp]
54 / 2e-07 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1)
Lus10025002
[exp]
52 / 9e-07 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1)
Lus10024641
[exp]
44 / 0.0002 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G045900
[exp]
597 / 0 AT5G13520 965 / 0.0 peptidase M1 family protein (.1)
Potri.010G215700
[exp]
579 / 0 AT5G13520 926 / 0.0 peptidase M1 family protein (.1)
Potri.006G224500
[exp]
49 / 5e-06 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1)
Potri.001G101975
[exp]
45 / 8e-05 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.001G102051
[exp]
45 / 9e-05 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
Potri.017G039200
[exp]
44 / 0.0002 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1)
Potri.003G129500
[exp]
42 / 0.0008 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF09127 Leuk-A4-hydro_C Leukotriene A4 hydrolase, C-terminal
CL0126 Peptidase_MA PF01433 Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence
>Lus10023479 pacid=23160520 polypeptide=Lus10023479 locus=Lus10023479.g ID=Lus10023479.BGIv1.0 annot-version=v1.0
ATGGAGCAGCCGATTCCTCCGTATCTGTTTGCGTTTGCGGTTGGGGAATTAGGGCTCAGGGAGGTGGGACCTAGGACTAAGGTTTATGCTGAGAATGTGG
ACGGGGTGCTGGAATCTGCGGCGATGGAGTTTGCTGGGACTGAGGAGATGATCCGGCAAGGGGAGAAGCTGTTTGGGGAGTATCCTTGGGAGAGGTTTGA
TCTGTTGGTGTTGCCTCCCAGCTTTCCTTATGGGGGGATGGAGAATCCGAGGATGGTTTTCTTGACGCCTACTGTGATCAAAGGTGATGCGAGTGGTGCT
CAGGTTGTGGCACATGAATTGGCTCATAGCTGGACTGGGAACTTGATTACCAACATTAACAATGAGCATTTCTGGTTGAATGAGGTAATAACCGATGATG
GTCAAAAACTCGAAATCTTCCCTGTCGAGTTTCACATTCCCCTAAGGTCTAGCTTAGTGTTTGCTTTCCTGATTCTGCATAACATCATATCTTCTGATTT
TGTTCATAGTTTACAGTTGATTGTTCACTACAGTTGGAATGTGCTGGAAACAGGATTTACAACGTACGCTGAGAGGAGAATTGTTGAGGTTGTGCAAGGA
GAAGAAAGAGCTATATTGAATATGGGTATTGGTTGGAGGGGTTTGAACGAGGAGATGGAGAGATTTAAGGACAACATGGAGTTTACAAAGCTTAAAACTA
ATCAGGAAGGAGTTGATCCGGATAACGTGTATTCTCAGGTTCCTTATGAGAAAGGTTTCCAGTTTCTTGCTCGAATTGAACGGCAGATTGGAAGGCCTGC
ATTTGATGAGTTTACGAAGAAGTATATCGAGACCTTCAAGTTTAAGTCAATCGATACTGATACATTTCTCGAATTCCTGAAAGGAAATGTCCCTGGAATA
GAGAAAGATGTTGACCTGAAATTGTGGACTGAGGGTACTGGACTCCCTCCTGATGCATATGAGCCAGTCTCCCACTTGTACAACTTGGATGCTCGATACC
GGCTGTCAGAGTCGAAGGACTACGAGGTAAAAGTAGGATTCCTGCAGATTGCAATTTCATCCAAGTGCAGAGATTACTACCCTGAAGTGGAGAAGACCTT
AAAGGAAGTGGGTAGGATGAAGTATCTCCGGCCGCTGTATACAGCTCTGGTTCAAGGCAGTGGGAAAGAAGAGGAGAAGATCTTGGCGAAAAGGTTGTTC
GCAGAGGCTCGGGAATGCTATCACCCGATTGCGCAAGGTGTCGTGGAATCGATCCTTGCTAAGCACGTCTAG
AA sequence
>Lus10023479 pacid=23160520 polypeptide=Lus10023479 locus=Lus10023479.g ID=Lus10023479.BGIv1.0 annot-version=v1.0
MEQPIPPYLFAFAVGELGLREVGPRTKVYAENVDGVLESAAMEFAGTEEMIRQGEKLFGEYPWERFDLLVLPPSFPYGGMENPRMVFLTPTVIKGDASGA
QVVAHELAHSWTGNLITNINNEHFWLNEVITDDGQKLEIFPVEFHIPLRSSLVFAFLILHNIISSDFVHSLQLIVHYSWNVLETGFTTYAERRIVEVVQG
EERAILNMGIGWRGLNEEMERFKDNMEFTKLKTNQEGVDPDNVYSQVPYEKGFQFLARIERQIGRPAFDEFTKKYIETFKFKSIDTDTFLEFLKGNVPGI
EKDVDLKLWTEGTGLPPDAYEPVSHLYNLDARYRLSESKDYEVKVGFLQIAISSKCRDYYPEVEKTLKEVGRMKYLRPLYTALVQGSGKEEEKILAKRLF
AEARECYHPIAQGVVESILAKHV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13520 peptidase M1 family protein (.... Lus10023479
[exp]
0 1
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Lus10016448
[exp]
2.8 0.9190
AT1G77360 Tetratricopeptide repeat (TPR)... Lus10009123
[exp]
3.7 0.8850
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Lus10015267
[exp]
8.7 0.9166
AT1G16340 ATKDSA2, ATKSDA Aldolase superfamily protein (... Lus10009596
[exp]
10.4 0.8811
AT5G24330 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDO... Lus10016526
[exp]
12.2 0.9036
AT2G40550 ETG1 E2F target gene 1 (.1) Lus10030540
[exp]
14.4 0.9033
AT3G18190 TCP-1/cpn60 chaperonin family ... Lus10026151
[exp]
20.3 0.8953
AT5G05520 Outer membrane OMP85 family pr... Lus10017441
[exp]
21.0 0.9027
AT5G54970 unknown protein Lus10043108
[exp]
22.8 0.8851
AT2G35350 PLL1 poltergeist like 1 (.1) Lus10000896
[exp]
24.5 0.8891

Lus10023479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.