Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45740 420 / 3e-146 hydrolase family protein / HAD-superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008416 [exp] 397 / 2e-136 AT3G45740 481 / 2e-169 hydrolase family protein / HAD-superfamily protein (.1) Lus10001969 [exp] 218 / 5e-68 AT3G45740 298 / 9e-100 hydrolase family protein / HAD-superfamily protein (.1) Lus10040363 [exp] 183 / 4e-57 AT3G45740 129 / 6e-37 hydrolase family protein / HAD-superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216000 [exp] 525 / 0 AT3G45740 466 / 1e-164 hydrolase family protein / HAD-superfamily protein (.1) Potri.008G045700 [exp] 517 / 0 AT3G45740 488 / 3e-172 hydrolase family protein / HAD-superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023480 pacid=23160635 polypeptide=Lus10023480 locus=Lus10023480.g ID=Lus10023480.BGIv1.0 annot-version=v1.0 ATGAGATTCCACAGGGTGGTTACTTCGAAACTTTCTGAAATGAAGTACAGGGCGCCATTGCTGCTTAACTCTACACCTTCACGTTGTTTCTCTCGCCTTC AAACGAATCACCTCCAGCAACAGCAACGGCCTTCTTTCGGAATCGCATTTGACATCGACGGGGTAATTCTTGGCGGTCGTGTCCCAATCGGCGGCTCCCC ACAAGCTCTGAGACGACTATATGGAGATTCAGGGTGTTTGAAGGTTCCCTTCGTGTTCCTAACTAATGGAGGTGGGGTTCCTGAAAATAGACGAGCTTCC GAATTAACTGAGCTTCTGGGAGTTAAGATTTTACCTTGTCAGATTTTACAAGGTCACTCTCCTTTCAGAAATTTGCTGAAGAGCTACGAGCATCAACTCA TCATTGTTACTGGTAAAGGGGAACCTGATGTCGTGATGTCTGAGTATGGTTTCAAAAATGTTCTTTCCTTAGATGATTATGCATCTTTATTCGAGAACAT AGATCCTGTGTCTCAATACAAGAGATGGACTAGTAAGGAAGTAGTGGACAGAAGTGGCTCATCCAGAAGTACTGTTCCAAGATGTGATATTCATTCTGAG TCAGTTAAAGCAGTCTTTGTTGTCAGTGATCCAGTAGATTGGGGCAGAGACATTCAGGTCATCTGTGATATCTTACGATCTGGAGGCGTTATTGGACAGA AAAGTGGGTCTCAACCTCCACTTTATTTTGCTGCCGATGATCTTGAATATCAGGCAAGCACATGGCTTTTTCCTGCTGCATTCCCGTCAAAGCGCCTTGG AATGGGGGCTTTTAGAATTGCTCTGGAAAGTGTCTTCAACAGAATTCATCACTGTCCTTTGGAATACGTGTCCTATGGGAAGCCAAATCCTTTTGTGTTC AAGAACGCTGAAGTTGTACTGAACCAGCTTCAACCAGCCCATCAATATAGTAGCTTCAAAGAATGTGAAGAACCCCTGTCATCATTTCCTCTCCAAACAC TTTACATGATTGGCGATAACCCTTACGTTGATGTCAAAGGTGCTAATCAGACTGGACGTCCTTGGTTCTCCATCTTAACAAGGACCGGTGTCTTCCGTGG CGAACACAATCATGCCGAGTTTCCTGCCGATCTGGTTGTTGACACTGTGGATGATGCAGTAGATTACATTGTGAGGAAGGAAAGCATCTCCTAA
AA sequence Show only first row Show all	>Lus10023480 pacid=23160635 polypeptide=Lus10023480 locus=Lus10023480.g ID=Lus10023480.BGIv1.0 annot-version=v1.0 MRFHRVVTSKLSEMKYRAPLLLNSTPSRCFSRLQTNHLQQQQRPSFGIAFDIDGVILGGRVPIGGSPQALRRLYGDSGCLKVPFVFLTNGGGVPENRRAS ELTELLGVKILPCQILQGHSPFRNLLKSYEHQLIIVTGKGEPDVVMSEYGFKNVLSLDDYASLFENIDPVSQYKRWTSKEVVDRSGSSRSTVPRCDIHSE SVKAVFVVSDPVDWGRDIQVICDILRSGGVIGQKSGSQPPLYFAADDLEYQASTWLFPAAFPSKRLGMGAFRIALESVFNRIHHCPLEYVSYGKPNPFVF KNAEVVLNQLQPAHQYSSFKECEEPLSSFPLQTLYMIGDNPYVDVKGANQTGRPWFSILTRTGVFRGEHNHAEFPADLVVDTVDDAVDYIVRKESIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	5.5	0.8774
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	5.7	0.8792
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032216 [exp]	6.0	0.8831
AT3G60810			unknown protein		Lus10004025 [exp]	7.7	0.8634
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10015371 [exp]	15.4	0.7409
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	15.7	0.8591
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	16.2	0.8710
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	19.4	0.8525
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	19.6	0.8465
AT2G20835			unknown protein		Lus10018561 [exp]	19.9	0.8496

Compare expression of checked genes

Lus10023480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.