Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39260 943 / 0 binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040364 [exp] 1255 / 0 AT2G39260 1620 / 0.0 binding;RNA binding (.1) Lus10030801 [exp] 131 / 1e-35 AT2G39260 142 / 1e-40 binding;RNA binding (.1) Lus10030802 [exp] 94 / 4e-19 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216100 [exp] 1066 / 0 AT2G39260 1533 / 0.0 binding;RNA binding (.1) Potri.008G045400 [exp] 1065 / 0 AT2G39260 1375 / 0.0 binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04050 [flax] [poplar] Upf2 Up-frameshift suppressor 2 CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Lus10023481 pacid=23160474 polypeptide=Lus10023481 locus=Lus10023481.g ID=Lus10023481.BGIv1.0 annot-version=v1.0 ATGGACCGTCACGAGGATGAAACTCGCGCAGGGAGCGGCGAGCCTCATCGCAAGCAAGACGACGAGGAAGCTGTTGCTCGACTTGAGGAAATGAAGAAAT CTATCGAGGCGAAAATTGCCCTTCGTCAAAGCAATTTGAATCCGGAAAGGCCTGACTCGGGCTTCCTAAGGACATTAGACTCTAGCATAAAGCGCAACAC AGCAGTTATTAAAAAATTAAAGCAGATAAATGAAGAGCAGAGAGAAGTGCTGATGGAAGAGTTGCGGAATGTTAACCTTAGCAAATTCGTAAGTGAGGCA GTGGCGGCTATCTGTGATGTAAAGCTTAGAAGTTCAGACATACAGGCTGCAGTGCAGATTTGCTCGTTGCTCCATCAGAGATACAAAGATTTCTCACCGA GCCTGGCACAAGGACTTCTGAAAGTCTTCTTTCCTTCCAAATCAGGCGAAGACGTGGATGTGGACAAGAATTCTAAGGCCATGAAGAAACGGAGCAGTTT AAAACTCCTATTAGAACTGTATTTCGTTGGGATTCTAGAAGATTGCAGTATCTTTATCAATGTCATCAAAGATCTTACTGGCTTGGAACACTTAAAGGAC CGTGATGCTACTCAAACTAATCTGACATTACTTGCTAGTTTTGCTCGACAAGGGAGGGTGTTTTTAGGGCTTCCATTCTCTGGACAGGAATTCCAGGAAG AGTTTTTCAGGGAACTTAATGTTTTGCCAGAACAGAAGAAAATATTCAAGAAGGCCTTTCATGTGTATTATGATGCTGTGTCAGAACTTCTCAAGTCTGA GCATGCTTCTCTTCGCCAGATGGAGCACGAAAATGCTAAAATTTTGAATGCTAAAGGGGAGTTGAGTGATGAAAATTCCTCCTCATACGAGAAGCTAAGA AAATCTTATGACCATTTGTACCGCAATGTTTCATCATTAGCTGAAGCCCTTGATCTGCAACCTCCAGTGATGCCGGAGGATGCACACACAACAAGGGTTA CTAGCAGGGAGGATACATCCTCACCTGATGCTGGAAAAGACTCTTCAGCTCTTGAACCGTTGTGGGATGATGAAGATACCAGAGCCTTCTATGAGTGTTT ACCAGATCTCAGAGCATTTGTTCCTGCTGTTTTGTTGGGGGAGGCAGATGCAAAAGCCAATGAGCAATCTGTGAAGACTCAAGATCAGTCTGCTGAGTCA AGTCTTGAAGCAGACCAAGACCAATCGACACAAGAAATTAAGGAGATTCCTGAAGAATGTGGTGTTCTTGATGAGTCAAAAGGTGTGGAGAAGGGGAAGG AGAAAGAAGAGAAAGATAAAAGTAAGGACGTGGAGAAAGAGAAAGGTAAAGACAAAGATACTGAGAAGAAAGGTGAAAATGAGAAGGAGAAGCTCAAAGG TGTGGAAAAGGGGAAGGAAAAGGATAGAAGTAAGGATACAGAGAAAGAGAAAGGCAAAGAAAAAGATAGCGAGAAGAAAAGTGAGAATGAGAAGGATAAA CACAAAGGAGTCGAAGTGTCAAATCTGGATGCTCTGCTGCAAAGGCTTCCTGGTTGTGTGAGTCGTGACTTGATTGATCAACTGACGGATCAAATGAACA TTGAAACAAAAAACAGGAATATCAGGTTCATTGGTGAACTATGCAAGTTCAGGATTGCACCAGCTGGCTTGATTTTTAGCTGTTTGAAGGAAGCTGTTGC TCGACTTGAGGAAATGAAGAAATCTATTGAGACGAAAATTGCCCTTCGTCAAAGCAATTTGAATCCGGAAAGGCCTGACTCGGGCTTCCTAAGGACATTA GACTCTAGCATAAAACGCAACACAGCAGTTATTAAAAAATTAAAGCAGATAAATGAAGAGCAGAGAGAAGTGCTGATGGAAGAGTTGCGGAATGTTAACC TTAGCAAATTCGTAAGTGAGGCAGTGGCCGCTATCTGTGATGTAAAGCTTAGAAGTTCAGACATACAGGCTGCAGTGCAGATTTGCTCGTTGCTCCATCA GAGATACAAAGATTTCTCACCGAGCCTGGCACAAGGACTTCTGAAAGTCTTCTTTCCTTCCAAATCAGGCGAAGACGTGGATGTGGACAAGAATTCTAAG GCCATGAAGAAACGGAGCAGTTTGAAACTCCTATTAGAACTGTATTTCGTTGGGATTCTAGAAGATTGCAGTATCTTTATCAATGTCATCAAAGATCTTA CTGGCTTGGAACACTTAAAGGACCGTGATGCTACTCAAACTAATCTGACATTACTTGCTAGTTTTGCTCGACAAGGGAGGGTGTTTTTAGGGCTTCCATT CTCTGGACAGGAATTCCAGGAAGAGTCTCTTCGCCAGATGGAGCACGAAAATGCTAAAATTTTGAATGCTAAAGGGGAGTTGAGTGATGAAAATTCCTCC TCATACGAGAAGCTAAGAAAATCTTATGACCATTTGTACCGCAATGTTTCATCATTAGCTGAAGCCCTTGATCTGCAACCTCCAGTGATGCCGGAGGATG CACACACAACAAGGGTTACTAGCAGGGAGGATACATCCTCACCTGATGCTGGAAAAGACTCTTCAGCTCTTGAACCGTTGTGGGATGATGAAGATACCAG AGCCTTCTATGAGTGTTTACCAGATCTCAGAGCATTTGTTCCTGCTGTTTTGTTGGGGGAGGCAGATGCAAAAGCCAATGAGCAATCTGTGAAGACTCAA GATCAGTCTGCTGAGTCAAGTCTTGAAGCAGACCAAGACCAATCGACACAAGAAATTAAGGAGATTCCTGAAGAATGTGGTGTTCTTGATGAGTCAAAAG GTGTGGAGAAGGGGAAGGAGAAAGAAGAGAAAGATAAAAGTAAGGACGTGGAGAAAGAGAAAGGTAAAGACAAAGATACTGAGAAGAAAGGTGAAAATGA GAAGGAGAAGCTCAAAGGTGTGGAAAAGGGGAAGGAAAAGGATAGAAGTAAGGATACAGAGAAAGAGAAAGGCAAAGAAAAAGATAGCGAGAAGAAAAGT GAGAATGAGAAGGATAAACACAAAGGAGTCGAAGTGTCAAATATGGATGCTCTGCTGCAAAGGCTTCCTGGTTGTGTGAGTCGTGACTTGATTGATCAAC TGACGGTGGAGTTTTGCTATTTAAATTCGAAGTCAAACAGGAAAAAACTTGCGAGGGCATTGTTTAATGTACCTCGCACATCTTTGGAACTGATACCATA CTATTCGCGCATGGTTTCCACGCTGTCAACATGCATGAAGGATGTGTCATCTATGCTATTGCAGATGCTGGAGGAGGAGTTCAATTTCTTAATCAATAAA AAGGATCAAATGAACATTGAAACAAAAAACAGGAATATCAGGTTCATTGGTGAACTATGTAAGTTCAGGATTGCACCAGCTGGCTTGATTTTTAGCTGTT TGAAGACCTGTTTAGATGATTTTACTCATCACAATATTGATGTTGCATGCAATCTTCTTGAGACGTGTGGCCGTTTCCTATATCGGTCCCCTGAAACTAC CATACGCATGGCCAACATGTTGGAGATACTAATGCGCTTGAAAAATGTGAAAAACTTGGACCCCAGGCATAGCACCCTTGTAGAAAATGCTTACTATCTG TGTAAACCACCTGAGAGATCTGCACGTGTGTCTAAAGTCCGTCCTCCTCTACATCAATACATCAGGAAACTGCTGTTCTCAGATCTGGATAAGTTCTCCA TTGAGCATGTACTGAGACAGCTTCGCAAGTTGCCATGGAGTGAATGTGAAGAATATCTCTTGAAATGTTTTTTGAAGGTTCACAGGGGAAAATACGGACA GATTCACTTGATTGCTTCTCTCACTGCTGGGCTGAGTCGCTATCATGACGAGTTTGCAGTTGCTGTTGTTGATGAGGTTTTGGAGGAGATCAGGCTTGGT CTAGAATTGAATGACTATGGAATGCAACAGAGACGCATTGCACATATGCGTTTCTTGGGTGAGCTTTACAACTATGAGCATGTGGATTCATCAGTGATTT TCGAGACTTTGTATCTGATCGTAGCATTTGGTCATGACACATCAGAGAGAGATGTGCTGGATCCACCTGAGGATTGCTTCCGCATCAGGATGATTATTAC CCTCCTTGAGACATGTGGACACTACTTTGATCGGGGTTCTTCAAGGAGGAAGCTTGATCGATTTCTGTTACACTTCCAGCATTACACTCTCAGTAAAGGT TCCCTGCCTCTTGATATTGAGTTTGACTTGCAGGACTTATTTGCTGAATTGCGCCCTAACATGATCCGTTACTCATCAATTGAGGAAGTCGGCGCAGCTC TTTTAGAACTTGAACGTCATGTTTCAACTGAGAAAAATAACAGTGAAAAGCATTCTGGGACTGAAAAGCTTCGTAACAGGACTTCTGCCAATGTTCCCTC TGCTAATGGGGAAACTCTTGCAAATGGAGATGATGAAAATGGCAGGTTACATGAGGAAGTTGTGGATAATATCACTGATTCAGGCAGTGACACAAATGAT CATGAGGGACATGATGATGAGTTGGATGAAGAAACCCATGATGATGGTGACACAGATGATGAGGATTATGACCACAGGGGTGCGCCTGGTTCTGATGAGG ATGATGAAGTCCGAATCAGACAAAAAGTAGCAGAAGTAGACCCTGAGGAGGCTGCAAGTTTTGAACAGGAGTTAAGAGCTGAAAGCATGGAGCAGCGAAG GCTGGATTTACGGGGTCGACCAGCACTCAACATGGTAATACCGATGAACTTGTTTGAAGGATCCACCAAGGATCATCATGGAAGAGGGACTGGAGGTGAA AGTGGTGATGAGACATTGGATGAGGAAGCTGAAGGCGGCAAGGAGGTCAAGGTCAAAGTACTTGTTAAACGTGGTAACAAGCAACAGACGAAGCAGATGT ACATTCCTAGTGATTCATCTCTTGTCCAGAGCACTAAGCAAAAGGAAGCAGCAGAGCTTGAAGAGAAACAAGATATCAAAAGGCGTGTCTTGGAATATAA TGAGAGGGAAGAAGAGGAGAGCAACGGTTTGGGGACCCAGACACTAAATTGGTCGTCTCCTGGACATGGCAGAGGTGGTGGCCGGGGTGGCTCATGGGAA GGAAGTAGTGTACGGGGTGGTGGAGTACGCTTTCGGCTTCATCATTCTGGTGCTGGAGCCTATCATGGAAGGCGAAGGTGA
AA sequence Show only first row Show all	>Lus10023481 pacid=23160474 polypeptide=Lus10023481 locus=Lus10023481.g ID=Lus10023481.BGIv1.0 annot-version=v1.0 MDRHEDETRAGSGEPHRKQDDEEAVARLEEMKKSIEAKIALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREVLMEELRNVNLSKFVSEA VAAICDVKLRSSDIQAAVQICSLLHQRYKDFSPSLAQGLLKVFFPSKSGEDVDVDKNSKAMKKRSSLKLLLELYFVGILEDCSIFINVIKDLTGLEHLKD RDATQTNLTLLASFARQGRVFLGLPFSGQEFQEEFFRELNVLPEQKKIFKKAFHVYYDAVSELLKSEHASLRQMEHENAKILNAKGELSDENSSSYEKLR KSYDHLYRNVSSLAEALDLQPPVMPEDAHTTRVTSREDTSSPDAGKDSSALEPLWDDEDTRAFYECLPDLRAFVPAVLLGEADAKANEQSVKTQDQSAES SLEADQDQSTQEIKEIPEECGVLDESKGVEKGKEKEEKDKSKDVEKEKGKDKDTEKKGENEKEKLKGVEKGKEKDRSKDTEKEKGKEKDSEKKSENEKDK HKGVEVSNLDALLQRLPGCVSRDLIDQLTDQMNIETKNRNIRFIGELCKFRIAPAGLIFSCLKEAVARLEEMKKSIETKIALRQSNLNPERPDSGFLRTL DSSIKRNTAVIKKLKQINEEQREVLMEELRNVNLSKFVSEAVAAICDVKLRSSDIQAAVQICSLLHQRYKDFSPSLAQGLLKVFFPSKSGEDVDVDKNSK AMKKRSSLKLLLELYFVGILEDCSIFINVIKDLTGLEHLKDRDATQTNLTLLASFARQGRVFLGLPFSGQEFQEESLRQMEHENAKILNAKGELSDENSS SYEKLRKSYDHLYRNVSSLAEALDLQPPVMPEDAHTTRVTSREDTSSPDAGKDSSALEPLWDDEDTRAFYECLPDLRAFVPAVLLGEADAKANEQSVKTQ DQSAESSLEADQDQSTQEIKEIPEECGVLDESKGVEKGKEKEEKDKSKDVEKEKGKDKDTEKKGENEKEKLKGVEKGKEKDRSKDTEKEKGKEKDSEKKS ENEKDKHKGVEVSNMDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLARALFNVPRTSLELIPYYSRMVSTLSTCMKDVSSMLLQMLEEEFNFLINK KDQMNIETKNRNIRFIGELCKFRIAPAGLIFSCLKTCLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYL CKPPERSARVSKVRPPLHQYIRKLLFSDLDKFSIEHVLRQLRKLPWSECEEYLLKCFLKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLG LELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLYLIVAFGHDTSERDVLDPPEDCFRIRMIITLLETCGHYFDRGSSRRKLDRFLLHFQHYTLSKG SLPLDIEFDLQDLFAELRPNMIRYSSIEEVGAALLELERHVSTEKNNSEKHSGTEKLRNRTSANVPSANGETLANGDDENGRLHEEVVDNITDSGSDTND HEGHDDELDEETHDDGDTDDEDYDHRGAPGSDEDDEVRIRQKVAEVDPEEAASFEQELRAESMEQRRLDLRGRPALNMVIPMNLFEGSTKDHHGRGTGGE SGDETLDEEAEGGKEVKVKVLVKRGNKQQTKQMYIPSDSSLVQSTKQKEAAELEEKQDIKRRVLEYNEREEEESNGLGTQTLNWSSPGHGRGGGRGGSWE GSSVRGGGVRFRLHHSGAGAYHGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	5.2	0.8584
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	5.9	0.7875
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	9.8	0.7678
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	13.9	0.8100
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	17.7	0.7677
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	17.7	0.7866
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	20.0	0.7844
AT3G46220			unknown protein		Lus10004920 [exp]	21.9	0.7652
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	24.3	0.7415
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	26.4	0.7637

Compare expression of checked genes

Lus10023481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.