Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54970 229 / 7e-75 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040366 [exp] 316 / 8e-106 AT3G54970 347 / 1e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216500 [exp] 263 / 3e-88 AT3G54970 338 / 3e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10023483 pacid=23160617 polypeptide=Lus10023483 locus=Lus10023483.g ID=Lus10023483.BGIv1.0 annot-version=v1.0 ATGCTGGACGTGTATGTACGCCTTGGTGGCTATGTTCCTCCGGCGTTCGGTGGATCAGGGACTATGGCGAGATTGGCTGTTGTAGGTCAAGGAAGATGCT TGGCCGAAGCTAAGTATTCGGATTGGGTAAGGATAAGGAAGCCACTGGAGAGGTTGAGGCCTCCTTTAGTGACGGAGCTCCTGTTGTCCAACGATGGCGA TCATTTGCTTGAAGGCTTGGTCACAAATTTCTTCGTTGTTTGTCGGAAGGTGAGATTCAGTAAGGGAAATCAGCTGTACATTCTTAGCTCTGTAGTTCAT CAAAAAAACAATGGAGCTGGTGAAAATGGATATCCCTTTGAAGTGCAAACAGCTCCGCTTGCCGATGGTGTTCTTCCAGGAGTAATCCGTCAACTAGTCA TCGAAGTGTGCTTAAGCAAGGGGATTGCAGTTCAAGAAGTTGCTCCATCATGGTCAAAGCGTGAATCTTGGCAAGAAGCATTTGTTACAAGTAGCCTGAG AATCGTGCAGCACGTGGAAAGAATCCAATTCCCACATTCATGGGAATCATTAGAACAGAAATCTCCAGAAGAGATCTCGTGGGATGAAAAGCAGTTTGAG AATGAGATAATGAAGAAGGCGATCCTGGAAGGGTATCCATTGTGA
AA sequence Show only first row Show all	>Lus10023483 pacid=23160617 polypeptide=Lus10023483 locus=Lus10023483.g ID=Lus10023483.BGIv1.0 annot-version=v1.0 MLDVYVRLGGYVPPAFGGSGTMARLAVVGQGRCLAEAKYSDWVRIRKPLERLRPPLVTELLLSNDGDHLLEGLVTNFFVVCRKVRFSKGNQLYILSSVVH QKNNGAGENGYPFEVQTAPLADGVLPGVIRQLVIEVCLSKGIAVQEVAPSWSKRESWQEAFVTSSLRIVQHVERIQFPHSWESLEQKSPEEISWDEKQFE NEIMKKAILEGYPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54970			D-aminoacid aminotransferase-l...		Lus10023483 [exp]	0	1
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	10.3	0.7542
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	19.5	0.7432
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	27.0	0.6706
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	27.2	0.7140
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	41.3	0.6908
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	52.1	0.6815
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	154.0	0.6072
AT1G26180			unknown protein		Lus10031917 [exp]	161.7	0.6235
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10017091 [exp]	176.2	0.6111
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10000138 [exp]	190.4	0.5886

Compare expression of checked genes

Lus10023483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.