Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37060 212 / 5e-71 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G38880 207 / 2e-69 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT3G53340 202 / 4e-67 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT4G14540 178 / 9e-58 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 172 / 3e-55 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G13570 165 / 4e-52 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G47810 151 / 3e-47 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT5G47670 146 / 1e-44 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 144 / 2e-43 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT1G09030 132 / 6e-40 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040366 [exp] 298 / 1e-99 AT3G54970 347 / 1e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10015058 [exp] 202 / 4e-67 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001751 [exp] 178 / 5e-57 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 176 / 2e-56 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 175 / 5e-56 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 174 / 1e-55 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023167 [exp] 168 / 7e-54 AT2G37060 172 / 2e-55 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10036637 [exp] 166 / 5e-53 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10035854 [exp] 165 / 5e-52 AT4G14540 181 / 4e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216600 [exp] 252 / 8e-87 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.008G044800 [exp] 251 / 1e-86 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 215 / 3e-72 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.016G006100 [exp] 176 / 9e-57 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 176 / 2e-56 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 175 / 2e-56 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 176 / 3e-56 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 172 / 4e-55 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 168 / 4e-53 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G065300 [exp] 159 / 7e-50 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10023484 pacid=23160596 polypeptide=Lus10023484 locus=Lus10023484.g ID=Lus10023484.BGIv1.0 annot-version=v1.0 ATGGCAGAGAACCCAGGGAGTCCAGCAGGAGGGAGCCATGACAGTGGGGGTGAGCATAGCCCACACTCTGGAGTGAGGGAGCAGGACAGGTTCCTTCCTA TCGCCAATATAAGCAGGATCATGAAGAAGGGCTTGCCTGCTAACGGCAAAATTGCAAAGGAAGCTAAGGATACTGTTCAGGAATGTGTATCCGAGTTCAT CAGTTTCATCACTAGCGAGGCGAGCGATAAATGTCAAAAGGAAAAGAGAAAGACGATCAATGGGGACGATTTGCTATGGGCAATGGCAACATTAGGCTTT GAGGATTATATCGAGCCACTCAAGGCGTACCTAGCTAGGTACAGAGAGGGAGATGCTAAAGGGTCTGCTAGGGGTGAAGGATCCGCTGCTAAAAGGGATC CCATGGGCGGCAACGGCATGCCTGCTCAGAATACTCAGATGACTTTGAACATGGTATGTGCAGGGACAAGGGCAGCATATGGTAGTTCCTTCCATGCATG GCAATGA
AA sequence Show only first row Show all	>Lus10023484 pacid=23160596 polypeptide=Lus10023484 locus=Lus10023484.g ID=Lus10023484.BGIv1.0 annot-version=v1.0 MAENPGSPAGGSHDSGGEHSPHSGVREQDRFLPIANISRIMKKGLPANGKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF EDYIEPLKAYLARYREGDAKGSARGEGSAAKRDPMGGNGMPAQNTQMTLNMVCAGTRAAYGSSFHAWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023484 [exp]	0	1
AT1G22140			unknown protein		Lus10025627 [exp]	1.4	0.8784
AT5G64180			unknown protein		Lus10013157 [exp]	6.0	0.8388
AT5G52545			unknown protein		Lus10014958 [exp]	6.6	0.8566
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	7.5	0.8629
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	8.9	0.8771
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	9.6	0.8702
AT3G62140			unknown protein		Lus10038035 [exp]	12.1	0.8726
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	13.0	0.8657
AT5G05360			unknown protein		Lus10012213 [exp]	13.7	0.8595
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	14.0	0.8396

Compare expression of checked genes

Lus10023484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.