Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54770 54 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041423 [exp] 77 / 5e-17 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044700 [exp] 106 / 4e-28 AT3G54770 234 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G216800 [exp] 84 / 8e-20 AT3G54770 216 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023485 pacid=23160503 polypeptide=Lus10023485 locus=Lus10023485.g ID=Lus10023485.BGIv1.0 annot-version=v1.0 ATGATCAACGGCCGCCGTGCGAACTGCAACCTAGCGTCCCTCGGCGCTCGCCGGCCTAGGTCGTCTGTCCCCACGCCTTCCACCACTCCTCCACCTCCGA CGACGGCAGCTCAGCTACCACATCAGCAGCATCACATGATCCACCACCACCACCACCATCCCCACCACAATCAACAAGTAGCAAGGGCCACGTTGGCAGC CAATCAGCATCATCAATTGACCCAGTGGTATTATCCAGCAGCGCAGCCTGCATACCCGCACCACCACAATCACGCCGTCCCTTTCTACGGGTACACGCCG ACTTACATTGCAGCTGATATGAGCTACAATCAGAAGTTGAGCTACGGAGGTGGAGCCTACATGAGCACGGGGCAATACGGGCAGGTGTACAGGCAGCAGC AACACACAATGCCGATGGTGCAGCCGATGATGTACCCGCTCTACCACTTCCACCACCAATCTCAGGTGATGGGACTTCCGGCAGCGGCAGCCCACTTCTA CGCTCCGACCGCCACGACGGCGGGTGCTATCCCGGCCATCATGTCTAAACCTCCTCCTATCTCAGGTGGTGGTGGTACAGTTGGAGCAGTTGAAAGCTTT AAGAAGGTTTGTTAA
AA sequence Show only first row Show all	>Lus10023485 pacid=23160503 polypeptide=Lus10023485 locus=Lus10023485.g ID=Lus10023485.BGIv1.0 annot-version=v1.0 MINGRRANCNLASLGARRPRSSVPTPSTTPPPPTTAAQLPHQQHHMIHHHHHHPHHNQQVARATLAANQHHQLTQWYYPAAQPAYPHHHNHAVPFYGYTP TYIAADMSYNQKLSYGGGAYMSTGQYGQVYRQQQHTMPMVQPMMYPLYHFHHQSQVMGLPAAAAHFYAPTATTAGAIPAIMSKPPPISGGGGTVGAVESF KKVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	0	1
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	1.0	0.9621
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	3.5	0.9510
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	5.8	0.9049
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	6.7	0.9408
AT2G17080			Arabidopsis protein of unknown...		Lus10023952 [exp]	6.7	0.8613
					Lus10019304 [exp]	8.1	0.9177
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	8.1	0.9375
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	8.2	0.9381
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	8.4	0.9331
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	9.2	0.9380

Compare expression of checked genes

Lus10023485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.