Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09670 211 / 8e-57 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G54760 204 / 3e-54 dentin sialophosphoprotein-related (.1.2) AT5G02950 179 / 9e-47 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 148 / 1e-35 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 103 / 7e-22 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 102 / 1e-21 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 101 / 2e-21 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 77 / 1e-13 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT3G61740 46 / 0.0003 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040367 [exp] 2191 / 0 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 195 / 1e-51 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10016267 [exp] 194 / 5e-51 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10014546 [exp] 163 / 2e-40 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 160 / 2e-39 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 102 / 1e-21 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 102 / 2e-21 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 75 / 3e-13 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 68 / 6e-11 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216900 [exp] 684 / 0 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 681 / 0 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.006G131800 [exp] 325 / 6e-94 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 225 / 5e-62 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.004G130600 [exp] 159 / 4e-39 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 108 / 3e-23 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 107 / 5e-23 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.013G018700 [exp] 104 / 3e-22 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 53 / 2e-07 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10023486 pacid=23160496 polypeptide=Lus10023486 locus=Lus10023486.g ID=Lus10023486.BGIv1.0 annot-version=v1.0 ATGGACGGGAGCGAGGATAAGGATGCCAAGGGTTCATCTAGTACAGTCACAGTTACTGAGCCAGTAGCTGCTAGTGACGCTGGTAGTAAGAAACTCTCTA CTGCTGCTGTGGAAAACGTAGAGGAATCGAAATCGAGAGTAGTGCTTGGGTTTGATGGGCATGAAGTGGATTTGGAGAAAGATGCAGAAGAAGAAGAGGA AGGGGAAGGCGTGTCTGGTACAGTTGATGGCTTGGGACCTGTTCAGGACACGGGTGATGAGGCATGGAGTCCGATAACTAAGAGTGTCGAGTGGAACTCG TTGCAAGAGGATGTAGGTAAAGATGGCAAGGCCAAAGTTGATGATGAAGCTTTACCTGAAAGTGCCTCTCTAAAAGAGAGTTCGATAGATGAGGAAAGAC TTGCAACTGATGTCTCCACGGGTGAGGGTACCGAACTTGTAGAGGGTTCGTCGGTTGTGGAGACTGTCGTCACAGAAACAGAAACAGAAACGGTTGTGGA GACTGTAGTCACAACAACGGTTGTAGAGACTGAAGTCATGGAAACCCAAGTTGCTGATGATTCTGAAGATGGTGGGGATGGAGACACACATGTTATGGAT AGTTTTGAGGATGGGGAACCGCCTCGGTTTGTACAGGTTTCAGAAGGCGGGGATACCCAAATCTTGGATGATTCTGGTGATAGCGATGCTGCATCTGCTG AAGGGGAGACACAGGTTGTTCCGAGTTTAATGAATCAGGATGCCCAAGTTGCAGGGGTTCCTGGTAACAAGGACATAGATGGTTCTAGGGATGAGGAAAC CCTTGCTACCCATGATTCCAAGGGCAGGGAAACTCAGGTTTTTGTGGATGGTTCCAAGGATGGGGAAAATGTGCTAGGTTCGGTGGCTGAAGGTACGCAG GTCGTAGAGGATTCTATTGACAACGACATTGATTGTTGCCGGGAGGGTGAAGCCCAAGTTAATGATGGTCCCAAGCATGCCGAAGCTCAGATTTTACAAG ATTCAGTGGGTAAGGATGTCACTGAAGTTAATGATCATACTAACTATGGAGTAACTCAGGTTACACACAGTTTATCTGATGATACCCAAGTCATAGAGGA TCGTGATACTCATGACGTGGATGTTTCCAAGAATGTGGACACTGAAATAACTTATAGTTCCAGTGGTCAGGAGACTCAAGTTGCTGATGATTCGATGGAT GTGGAAACTAAGGTTATCAACGGTTCAATAGATGCTGAAGAACAAGTCAAAGTTGCCGATACTCCTGCCATTTCAGAAGATGAAAATGTGGAGAGGGGTT TAACAGATGAAGGTGCTCCTATTCCAATTGAGGATCTAAATTATAAGGAAGTTGGTGCATCGGACCAAGACATCAATGATGCAGGTATGTCAGATGATTC GATGGATGTGGAAACTGAGGTTGTCAATGGTTCAGTACATGCTCAAGAACAAGTCACAGATGCTGATACTTCTGCCGTTTCAAAAGATGAGAATGTAGAG AGAGGTTTAACAGAGGAAGTTGCTCCTACACCGATTGGGGATATAAATTCTCAGGAAGTCAATGCATTGGAGCATGACATCAAGGATCTAAGTACGTCTG GTGGTTCGGAAGTCACTTGTGGGGAAAATAATCAAGTTTCTGCTGCTACTGAGAAAACCGAGTTGGTTAAAGAGCAGCCAATGGAAATTGTTGAAACTAA ACAAGATGTTGCTCAATATTCAGGGTTTAAACTGGAATCTGCTTTCCCACGTGAAGCAACAAGTGTTGATCCCGTGGACCAGGTACCTAGAATTGATGCT CTGGATGGAATGACATCCAGTTCTGTCAATGATTCAGTTCTAGTGGAGAAAAATGAGATTGAGTATCCCACCTGTGAAACTCTGGACAAAGTAATGCAAG TTTCTGTTCAAGGGAACATTGCATCAGTGGACGATGGAGATATTACTTGTCCGAACATTGAAGGTATGGATGCTGATGCTTTTAATGAAAATTTTTGCTT TTCAGTGGAAGAACTCCAGGCACCAGGTGAAACAGTCAACGGGAGCACTGAACATCACTATAATGCACTTGCAGATCTACCATCTTTCTCTCAACCAACT GATGTGTTTATTGGAGGTGAATTTGCTGGTACCATGGAAGAGAAGGTATTTCCGTTTTCCGGAAAAGAACACTTCATACACCAGTCTGTCTCTTTTGGTC CTATTAGGGATAACTCAAACGTAGAGCAAGTAATGATAAATGGCATACAAATTACTTATGCTGAACAAACTTGTCTGCAGAAACAGCAGGAAACTAGAGT TGCAGCTGGCAAGCTAGTGGATGCAGATAAAGAGGGTGTAGCAAATGGTAGCATTCATTCTCCAGATTCAACTTCTTCTTTCCATTCTACCCAGGCAGTT GCTGGAGACGATGTTGCCCAAATGGATCACATTGTCGGTTTAGATGCAAGAGCCTCTGGAGACGATCAGTCAGCTTCCTTCCACAATGAAGTTTTAGCTT CCACCACCGGTTTCACAAAAGCCTCTGTGAACAATGTAGAGTTGGTTGTAGAGACCAGTATTCTTGATGTGAAAGAAAGGGGAGTTGATACTACTGAGGA CAAATCTCCTCAATGGGCTAGTTTACATTGGGGAAGCTTTGCAAAGGCACAGCAAGCTAAATATCAGCTGCCATCAGACTTCGATGGTGAATTCTGTGTA TCTGATTTGGTTTGGGGAAAAGTTAGGAGTCATCCTAGGTGGCCTGGGCAGATATTTGACCCTGCAGATGCGTCTGAGCAAGCATTGAAGTATCAGAAGG ACAGTTTTTTGGTAGCATATTTTGGGGACCGTACATTTGCCTGGAATGAAGCACATCTTTTAAAGCCATTTAGATCCCATTTTAGCCAGTCAGAGAAGCA AAGCAATTCAGAAGCATTCCAGAATGCTGTTGATTCTGCTTTGGAAGAAGTTTCTAGGCGAGTCGAAATGGGTTTGGCTTGCTCCTGTGTGCCAAATGAA GATCGATACAAAATCGAGTCAGAGCTTGTTGGTAATGCCGGAATCCAAGACGAAGCCATCACAAGAGGTGACTTGAACGTATCTAGAACTGCAGGGATGT TTGAACCTGTCAATTTGATTAATTATGTGAAATCTCTGGCGCAATCCCCAGCTTCCGGGGCTGATCGTGTAGAGCTCGCCATTCTAAGGTCTCAGTTGCT CTCCTTCTATCGTTTAAAAGGCTATTCTTCCCTGCCTGAGTTTCAGTGCTTTGGTGAGTCGTTGGAGGATGGCGAGGCAATTAATCATGCTTGTGAAGAT GACTTGCAACCTTCCACTTTGCCAAATTCCCATACTCAAAGACCTGCTTATCATAAACGTAAACATAACTTGAAGGATGGTGTTTATCGTGGTAAAAAGG TTAAAAGCTCGACCCTTTTGATGGATGACTCGTGGGATTCCTTAGAGGTTGAAGTGGGAGCCGAGGCAAAGAGCCGCAAGGGTCCCGAAGAGGTAAAAAC GATATCTCTCACTAAAATATCGACTTCTCCGAAGCCTTCCTTTAGGATCGGCGAATGTATTCGGCGAGCAGCTAGTCAAATGACGGGATCGCCCTCAATC CTGAAGTCAAACAGCCAGAAGTTCGAGTTCGATGATGAATTTGACCATAGCATGCCACAGTGTGACGAGGGAGAAAATAACAGCGTGGATGCATCTGTAG ACGAGTTGCTAGTGCAGCTTCAGTCAGCAGCACTGCAAAGATGTAGTTCTTCGAATGGTATTGTTGGGTTCTTCTCTGATTATAGAAACTCTGTGGTTGT TGACCAACAAGATGTTGTGCTGGTTGATAAGAGGAGGAAAGTGTCTCATTCGGTTGGCGATTCAGAAACGTACGAGTTTGTGGATATGAACGACACTTAC TGGACCGACAGGGTGATTGAAAACGGTTCAGAAGAGAAGCCTACTCAGACCGACCGGGTAATTGAAAATGGTGGTTCGGAAGAGAAGCCCACTCGAAAGA GCAAAAAACGGGAGAATCTATTCGTACCGGTCAGTCTCGATAAACCGGTTCAGAAGTCGAATGCCAGGAAACGATATTCTGACGGCAACAACTTCAACGT GTCGCAGGAGAAACCACCCGGTTATGTGGACCCCAAGGCTCCGGCGGAGCTTGTGATGCATTTCCCAGTGGTGGATTCGGTTCCTTCCGAGATGAAACTG AACAAGATGTTCAAATGTTTTGGACCGTTAAAAGAATCCGGGACAGAGGTTGATCGGGATACTAACCGTGCCAGGGTGGTGTTTAGGCATTCGTCTGATG CAGAGGCTGCTTATGGTAGTGCATCAAAGTTCAACATTTTCGGGTCGTTGCTTGTAAATTACCAGCTCAACTATACCATATCCGTGCCGTTCAAATCTGA ACCGATCTCCATTACTCATGGAGACGAAGATGGAAATGTCTTTCTCCAATACTGA
AA sequence Show only first row Show all	>Lus10023486 pacid=23160496 polypeptide=Lus10023486 locus=Lus10023486.g ID=Lus10023486.BGIv1.0 annot-version=v1.0 MDGSEDKDAKGSSSTVTVTEPVAASDAGSKKLSTAAVENVEESKSRVVLGFDGHEVDLEKDAEEEEEGEGVSGTVDGLGPVQDTGDEAWSPITKSVEWNS LQEDVGKDGKAKVDDEALPESASLKESSIDEERLATDVSTGEGTELVEGSSVVETVVTETETETVVETVVTTTVVETEVMETQVADDSEDGGDGDTHVMD SFEDGEPPRFVQVSEGGDTQILDDSGDSDAASAEGETQVVPSLMNQDAQVAGVPGNKDIDGSRDEETLATHDSKGRETQVFVDGSKDGENVLGSVAEGTQ VVEDSIDNDIDCCREGEAQVNDGPKHAEAQILQDSVGKDVTEVNDHTNYGVTQVTHSLSDDTQVIEDRDTHDVDVSKNVDTEITYSSSGQETQVADDSMD VETKVINGSIDAEEQVKVADTPAISEDENVERGLTDEGAPIPIEDLNYKEVGASDQDINDAGMSDDSMDVETEVVNGSVHAQEQVTDADTSAVSKDENVE RGLTEEVAPTPIGDINSQEVNALEHDIKDLSTSGGSEVTCGENNQVSAATEKTELVKEQPMEIVETKQDVAQYSGFKLESAFPREATSVDPVDQVPRIDA LDGMTSSSVNDSVLVEKNEIEYPTCETLDKVMQVSVQGNIASVDDGDITCPNIEGMDADAFNENFCFSVEELQAPGETVNGSTEHHYNALADLPSFSQPT DVFIGGEFAGTMEEKVFPFSGKEHFIHQSVSFGPIRDNSNVEQVMINGIQITYAEQTCLQKQQETRVAAGKLVDADKEGVANGSIHSPDSTSSFHSTQAV AGDDVAQMDHIVGLDARASGDDQSASFHNEVLASTTGFTKASVNNVELVVETSILDVKERGVDTTEDKSPQWASLHWGSFAKAQQAKYQLPSDFDGEFCV SDLVWGKVRSHPRWPGQIFDPADASEQALKYQKDSFLVAYFGDRTFAWNEAHLLKPFRSHFSQSEKQSNSEAFQNAVDSALEEVSRRVEMGLACSCVPNE DRYKIESELVGNAGIQDEAITRGDLNVSRTAGMFEPVNLINYVKSLAQSPASGADRVELAILRSQLLSFYRLKGYSSLPEFQCFGESLEDGEAINHACED DLQPSTLPNSHTQRPAYHKRKHNLKDGVYRGKKVKSSTLLMDDSWDSLEVEVGAEAKSRKGPEEVKTISLTKISTSPKPSFRIGECIRRAASQMTGSPSI LKSNSQKFEFDDEFDHSMPQCDEGENNSVDASVDELLVQLQSAALQRCSSSNGIVGFFSDYRNSVVVDQQDVVLVDKRRKVSHSVGDSETYEFVDMNDTY WTDRVIENGSEEKPTQTDRVIENGGSEEKPTRKSKKRENLFVPVSLDKPVQKSNARKRYSDGNNFNVSQEKPPGYVDPKAPAELVMHFPVVDSVPSEMKL NKMFKCFGPLKESGTEVDRDTNRARVVFRHSSDAEAAYGSASKFNIFGSLLVNYQLNYTISVPFKSEPISITHGDEDGNVFLQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	0	1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	2.0	0.9594
AT3G55160			unknown protein		Lus10007253 [exp]	2.0	0.9735
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	4.9	0.9609
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10011489 [exp]	5.3	0.9569
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032647 [exp]	6.0	0.9433
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	6.5	0.9632
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	6.9	0.9573
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	8.4	0.9582
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	10.0	0.9510
AT3G16010			Pentatricopeptide repeat (PPR-...		Lus10011464 [exp]	10.4	0.9072

Compare expression of checked genes

Lus10023486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.