Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38890 85 / 4e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023170 [exp] 45 / 0.0001 AT3G53320 133 / 1e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217000 [exp] 89 / 8e-19 AT2G38890 92 / 2e-20 unknown protein Potri.008G044500 [exp] 89 / 1e-18 AT2G38890 107 / 1e-25 unknown protein Potri.016G085600 [exp] 48 / 2e-05 AT3G53320 174 / 4e-46 unknown protein Potri.006G131650 [exp] 47 / 3e-05 AT3G53320 146 / 1e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023488 pacid=23160618 polypeptide=Lus10023488 locus=Lus10023488.g ID=Lus10023488.BGIv1.0 annot-version=v1.0 ATGACATCCGCCGCCGCCCAATTCCCCGCCGACTTCCAGTTCTCTGCAGAAGTGTCAGAGAAGAGGAAGAAGGTGGATTTCAAGTCAAGTTTCGAGTCCC CTGACTGCAATTGGCGCAATAGTTTGGCATGGGACACTGCCTTCTTTACAAGTCCTGGAATCTTGGAACTCGACGAGCTCTTCGAGACGCTCAACATTGA TGAAGAGAAGAATAAACAACAATCATCTACACAGTATGACACCCGTACAAGTCTGGCATGGGACAGCGCATTCCTCAACAGTGCAGGAGTTCTGGATGCC GAAGAGCTGTCTATGGTGAATAGAGGCTTCAGAAGCTCCGATGCAAAATCTAATGAAGTTTGGAGGTCTGTTGAGTCAACCTCCACTGCGAATAGTGATG GGAGCAGCTCTCTTGCTAGCCTTGAGATTGACCTTTTCAGTGACATCAAAGCACCATTCAATCAGAAGATGGTTGTCCAGGAAGGAAATGGTGGTTCTTC TTCTGGGAGGCCTCCGAGGATGTCATTCCGAGGGGTTTCTGCTGAGAGCAGAAGAGCTTCTTCCTTGATAGGCAGCCATGGTGGAAGTAAAGGGAAGACT AGGACAATCAGATCGACACCGAATACAAAATCGAAATCACCTTCCTCGGTCCTACCAGCTACCGGAAACGGCTCATTTGCCATACAAACTCCACCAATCC ATTTGAGGAGAACTGTGGCTACTACTACTGCTAGCTCAGTTCCTTCCTTCCGAACTCCATTGAAACTCTTGGCTGGACTCAGAAATGGATCTTCTTCTTC TGGAGGCCTCCGTTCCTCTAGTTTGTCATCTAAGCCTAAGGTCTCTCCAATTAGCTCCATCAGTGAACTACTACATAATGCTTCATCTCAAGCATCAGAA TCGAAGGTTCCTCGTTTACGTTTCGGAAGCTCCACTGTTCCACAGACAATGAAGAAGTCTGTAGGGGGATCAAGTCCTTTCCCTGCTGCTACTAAACTAC AACCTTCTGGGCTGAAAATGCCGTCGCCAAAGCTTGGCTACTTTGATCCAGATAATCCTAGTGGTTCAGTAAGGAGAGATGGAAGCTTCAGATACTCCAA GTCTCATGGACAACCAAGAATTTCAGATGTTGCTGGCAGAACAAGCCTAGGGAAACATCGATTGACTGGGAATCAAATAACTTTCTCTCTAAACAGCATC ACAACCACTAGCAACAACAATGAACAATGGGAGGATTGCTTCAACAACAACATGAAGAAGAAAAAGAAGAGAGATGCAAAAGATTCCAACTGCAGCTGTA ACAAGAGACCTGAGAACAACAAGGAGAATAGCATCGCAGTAGCTACTAGTAGTAGTAGCTTTGACAGTCATATTAAACCAGTTAGATTTTCTCCAGTTTG GAAGTAA
AA sequence Show only first row Show all	>Lus10023488 pacid=23160618 polypeptide=Lus10023488 locus=Lus10023488.g ID=Lus10023488.BGIv1.0 annot-version=v1.0 MTSAAAQFPADFQFSAEVSEKRKKVDFKSSFESPDCNWRNSLAWDTAFFTSPGILELDELFETLNIDEEKNKQQSSTQYDTRTSLAWDSAFLNSAGVLDA EELSMVNRGFRSSDAKSNEVWRSVESTSTANSDGSSSLASLEIDLFSDIKAPFNQKMVVQEGNGGSSSGRPPRMSFRGVSAESRRASSLIGSHGGSKGKT RTIRSTPNTKSKSPSSVLPATGNGSFAIQTPPIHLRRTVATTTASSVPSFRTPLKLLAGLRNGSSSSGGLRSSSLSSKPKVSPISSISELLHNASSQASE SKVPRLRFGSSTVPQTMKKSVGGSSPFPAATKLQPSGLKMPSPKLGYFDPDNPSGSVRRDGSFRYSKSHGQPRISDVAGRTSLGKHRLTGNQITFSLNSI TTTSNNNEQWEDCFNNNMKKKKKRDAKDSNCSCNKRPENNKENSIAVATSSSSFDSHIKPVRFSPVWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38890			unknown protein		Lus10023488 [exp]	0	1
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	2.8	0.8115
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	8.1	0.7923
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	8.2	0.7992
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	10.6	0.7858
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	11.0	0.7368
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	13.4	0.7856
AT1G68350			unknown protein		Lus10034340 [exp]	14.1	0.7539
AT5G66440			unknown protein		Lus10040435 [exp]	15.0	0.7075
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	15.2	0.6956
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	15.5	0.7809

Compare expression of checked genes

Lus10023488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.