Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35810 178 / 7e-58 unknown protein AT2G35830 177 / 9e-58 unknown protein AT2G35820 164 / 2e-52 ureidoglycolate hydrolases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040372 [exp] 202 / 6e-68 AT2G35830 197 / 4e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217500 [exp] 177 / 9e-58 AT2G35830 233 / 6e-79 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023491 pacid=23160556 polypeptide=Lus10023491 locus=Lus10023491.g ID=Lus10023491.BGIv1.0 annot-version=v1.0 ATGAAACTGACCAACCGCCCGCTCGAATTCGCCACAATCACTCACCACGCCAAGGTCACGCAGTGCCTCGGATCCATAGGCGGCGGAGCCTGGTACCTTG GAGTCGCAAAACCGTCGATCGTGGCCGCGGCGGCGGAGGGAGTGAAGAAGAAGAGATCCAATTCCGGCCATACGTACTTAGCTCCGGAGATTGACGATGT GCGGGTGTTCAGGTTCAGCGGTCCGACGTTCGTGAAGCTGGAGAAGGGGACGTGGCACGCCGGGCCGTTGTTCGAGGGAGAATCCATGGATTTCTACAAT CTGGAATTGAGCAACACTAATGTGGTCGACCACACAACTCACTACTTCAACAAGGAAAACGGAGTGGTTTTTGCCATTGACCAGAGTGATTGA
AA sequence Show only first row Show all	>Lus10023491 pacid=23160556 polypeptide=Lus10023491 locus=Lus10023491.g ID=Lus10023491.BGIv1.0 annot-version=v1.0 MKLTNRPLEFATITHHAKVTQCLGSIGGGAWYLGVAKPSIVAAAAEGVKKKRSNSGHTYLAPEIDDVRVFRFSGPTFVKLEKGTWHAGPLFEGESMDFYN LELSNTNVVDHTTHYFNKENGVVFAIDQSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35810			unknown protein		Lus10023491 [exp]	0	1
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	5.3	0.9234
AT4G14615			unknown protein		Lus10006639 [exp]	9.6	0.9086
AT5G57345			unknown protein		Lus10001438 [exp]	12.0	0.9041
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	12.4	0.8969
AT5G42070			unknown protein		Lus10023063 [exp]	13.2	0.9081
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	14.4	0.8958
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	16.9	0.8996
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	18.0	0.8975
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	18.2	0.8922
AT1G61930			Protein of unknown function, D...		Lus10006775 [exp]	18.8	0.8610

Compare expression of checked genes

Lus10023491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.