Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52300 295 / 6e-104 ATPQ "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040374 [exp] 338 / 8e-121 AT3G52300 293 / 3e-103 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10023337 [exp] 312 / 1e-110 AT3G52300 298 / 2e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Lus10038474 [exp] 310 / 5e-110 AT3G52300 297 / 7e-105 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043800 [exp] 298 / 4e-105 AT3G52300 291 / 3e-102 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2) Potri.010G217800 [exp] 290 / 5e-102 AT3G52300 281 / 1e-98 "ATP synthase D chain, mitochondrial", ATP synthase D chain, mitochondrial (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05873 [flax] [poplar] Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H)
Representative CDS sequence Show only first row Show all	>Lus10023492 pacid=23160462 polypeptide=Lus10023492 locus=Lus10023492.g ID=Lus10023492.BGIv1.0 annot-version=v1.0 ATGAGCGGAACGGTGAAGAAAGCAGCTGATGTTGCGTTCAAGGCGTCGAAGAACATTGATTGGGAAGGTATGGCCAAGCTCCTTGTCTCCGATGAGGCTC GCAAGGAGTTCTCCGGCCTCCGTCGCGCTTTCGATGAGGTCAATTCCACTCTCCAGACCAAATTTAGCCAGGAGCCTGAACCCATAGATTGGGAGTATTA CAGGAAAGGAATTGGCTCACGCTTGGTGGATATGTACAAAGAGGCTTATGACAGCGTCGAAGTCCCGAAGTATGTAGACAAAGTGACTCCGGAATACAAG CCTAAATTTGAGGCCTTGATGGTTGAATTGAAGGAAGCAGAGCAGATGTCTCTGAAGGAGTCCGAACGTTTGGAGAAGGAAATCGCCGAAGTCCAAGAGC TCAAGAAAAAGATCAGCACCATGACTGCAGATGAGTATTTCGAGAAGCATCCGGAGCTGAAGAAGAAGTTTGATGACGAAATCAGGAACGACTACTGGGG CTATTGA
AA sequence Show only first row Show all	>Lus10023492 pacid=23160462 polypeptide=Lus10023492 locus=Lus10023492.g ID=Lus10023492.BGIv1.0 annot-version=v1.0 MSGTVKKAADVAFKASKNIDWEGMAKLLVSDEARKEFSGLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDSVEVPKYVDKVTPEYK PKFEALMVELKEAEQMSLKESERLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	0	1
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	1.0	0.9527
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	2.0	0.9399
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	3.5	0.9200
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10030358 [exp]	6.9	0.9031
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	7.5	0.9086
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	8.7	0.8909
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	8.9	0.9162
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	9.4	0.9191
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10028321 [exp]	11.0	0.9106
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10004254 [exp]	13.4	0.8819

Compare expression of checked genes

Lus10023492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.