Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35800 974 / 0 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G26360 406 / 4e-135 Mitochondrial substrate carrier family protein (.1) AT1G34065 130 / 6e-33 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 125 / 2e-31 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G74240 123 / 3e-30 Mitochondrial substrate carrier family protein (.1) AT4G11440 117 / 3e-27 Mitochondrial substrate carrier family protein (.1) AT5G42130 114 / 8e-27 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT5G61810 100 / 5e-22 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G51050 92 / 3e-19 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 89 / 2e-18 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040375 [exp] 1487 / 0 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 130 / 5e-33 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 125 / 4e-31 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10029770 [exp] 112 / 2e-26 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 110 / 5e-26 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 102 / 1e-22 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 98 / 4e-21 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 92 / 3e-19 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 89 / 6e-19 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043700 [exp] 1080 / 0 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 1056 / 0 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 131 / 3e-33 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 128 / 2e-32 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 117 / 5e-27 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 111 / 5e-26 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 107 / 5e-25 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 108 / 1e-24 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 107 / 3e-24 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.014G135530 [exp] 94 / 2e-20 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10023493 pacid=23160580 polypeptide=Lus10023493 locus=Lus10023493.g ID=Lus10023493.BGIv1.0 annot-version=v1.0 ATGGTGTCTACAAATGACCCGATGGAGCCGTTTTTCAATTCATTCCAATCGGTGAAGGAAGCTCTCTCCCCGCTGGAGCTCGGAATTCGAAAAGCCGCTA AAGATTTCGAGACTTGTTGGGGGAGCGGCGGTTGGAGTAACGAGAAAGGATTCATAAACGAGTTGAATTGCGGAGGCGCCGGGAATCGAGTTCATAGCAA GTTTCAGATCCGTTCCGTTGAGAAGAAGAATGTGTGTAAGGTTGAAGAGAGGAAGAGAGGGTTATCCATTAGAGTTCCTGTTAGAGCTTTGCTTGGGCTG TTTGCTCCTAATTTAGAGCATCAGCGTAAGATGAATGGTGGCAGTGACACGTCGAAGAGAAGGTCAAAAGGGAAGGAAATGGTGAACGGAGATGAGGGTT GTACAAACTGTTTGAAGTTTGCTGTGACTTGGTCTGTGTTGGTTAATGGATTTGCTCAAGCGTTTCCTATTCCTTTGAAGAATAGCAAAAAGAAGCAGAG CGAACATAAGAAAGGAGAAGTGAAGGTTCAGTGTGTTAAAGTGTTCCAGAGTAAAAAATGGCGCGGGGAAGAGAAAGACGAGAAGCATCTGTCTCTAGAG TGTCTAATAGGCTTTTTGTTTGATCATTTGGCTCATAATCTGCAGAAATTCGATCAGATTTTGCAGAAGAACGAGAGCAAGTCTTGTGACGGCAAGATTC CAAACCAATCTCCGGTAACCTCTCATTTTGACCACCTTAAAACAGTTATGAGTATTTGGGAAGCTCGCAGGATAGACATGGATGGATTTTTAGGAAACTT AAGCTTTGCAAGAGTTGGAAGTGTACCTTCGACTATTGTTGGAGTACCTCCTTCAGTTAATGAAGAAGGCGATGATGGTGGTGAAGAGGCTGGAAGTGGT TCACCTCAGAAGCTAGCTAGTGGCTTGTTCAATATTCCATTATCCAATGTGGAGCGTTTGCGGTCGACCTTATCTTCTGTTTCATTAGCGGAGTTGATTG AGCTTGTTCCGCAACTGGGAAAGGCTTCCAAAGATCATCCTGACAAGAAAAAGTTATTCTCTGTCCAGGATTTTTTCAGATACACAGAGTCTGAAGGAAA AAGATTCTTTGAGGAGTTGGATAGAGACGGTGATGGTCAAGTGACACTGGAAGATCTTGAAATTGCTGTGAGAAAGAGGAAGCTGCCCAAGAATTATGCT CGCGATTTCATGCGTCGTGCCAGAAGTCATTTGTTTTCAAAATCTTTTGGTTGGAAGCAGTTTTTGTCAGTGATGGAACAGAGGGAACCAACAATTCTTC GTGCTTATACTTCTCTGAGCTTGAGCAAGTCTGGTACACTTAAGAAGAGTGAAATACTGGCGTCTCTTGAAAAGGCTGGACTTCCTGCAAATGAAGAAAA TGCCATGGCCATGATGCGATTTCTGAAGGCGGATGCAGAAGAATCTATCTCTTACGGCCATTTTAGGAATTTTATGCTTCTGCTGCCTTCTGATCGTCTT CAAGATGATCCCAGGAGCATATGGTTTGAAGCTGCAACTGTTGTCGCTGTTGCTCCTCCTGTGGAAATACCTGCTGGAAGTGTCCTACGATCTGCATTGG CTGGGGGCCTCTCATGTGCACTTTCCACATCTCTGATGCATCCTGTTGATACTGTAAAGACTCGTGTGCAAGCCTCCACTTTAACCTTCCCAGAGATCAT TTCAAAGCTTCCAGAAATTGGAGTTCAAGGTTTATACCGTGGTTCAATCCCTGCAATTCTGGGACAGTTTTCCAGTCATGGCCTGCGAACAGGCATCTTT GAAGCTAGCAAACTGCTACTAATTAATGTTGCCCCTACGCTCCCAGATTTTCAGGTGCAATCTATAGCATCATTTTGTAGCACAGTTTTGGGTACAGCCG TCCGAATTCCTTGCGAGGTGTTGAAGCAGCGTTTGCAGGCCGGTCTATTTGACAACGTCGGAGAAGCCATTGTAGGGACTTGGCAACAGGATGGTCTGAA GGGCTTCTTTCGCGGTACCGGTGCCACCCTCTGCCGTGAAGTTCCATTCTACGTGGTCGGGATGGGACTATACGGCGAATCGAAAAAGGTCGCTGAACGA TTTCTGCGGCGAGAGCTGGAACCCTGGGAAACAATTTGCGTCGGAGCCTTATCTGGCGGACTCACTGCCGTCTTAACAACCCCTTTCGACGTGATGAAGA CCAGAATGATGACTGCCCCTCGTGGTAGACACATCCCAATGTCGTTTGTTGCGTACTCGATACTTCGTCGCGAGGGCCCCCTCGGGTTGTTCAAGGGAGC ATTACCAAGGTTCTTCTGGATTGCACCTTTAGGCGCCATGAACTTTGCAGGGTATGAACTAGCAAGGAAAGCCATGACCAAAAGAGCGGAGCAAGAGCGA CAAGCTGCTGCCTCCGAAGTAGTTGACTAA
AA sequence Show only first row Show all	>Lus10023493 pacid=23160580 polypeptide=Lus10023493 locus=Lus10023493.g ID=Lus10023493.BGIv1.0 annot-version=v1.0 MVSTNDPMEPFFNSFQSVKEALSPLELGIRKAAKDFETCWGSGGWSNEKGFINELNCGGAGNRVHSKFQIRSVEKKNVCKVEERKRGLSIRVPVRALLGL FAPNLEHQRKMNGGSDTSKRRSKGKEMVNGDEGCTNCLKFAVTWSVLVNGFAQAFPIPLKNSKKKQSEHKKGEVKVQCVKVFQSKKWRGEEKDEKHLSLE CLIGFLFDHLAHNLQKFDQILQKNESKSCDGKIPNQSPVTSHFDHLKTVMSIWEARRIDMDGFLGNLSFARVGSVPSTIVGVPPSVNEEGDDGGEEAGSG SPQKLASGLFNIPLSNVERLRSTLSSVSLAELIELVPQLGKASKDHPDKKKLFSVQDFFRYTESEGKRFFEELDRDGDGQVTLEDLEIAVRKRKLPKNYA RDFMRRARSHLFSKSFGWKQFLSVMEQREPTILRAYTSLSLSKSGTLKKSEILASLEKAGLPANEENAMAMMRFLKADAEESISYGHFRNFMLLLPSDRL QDDPRSIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSTSLMHPVDTVKTRVQASTLTFPEIISKLPEIGVQGLYRGSIPAILGQFSSHGLRTGIF EASKLLLINVAPTLPDFQVQSIASFCSTVLGTAVRIPCEVLKQRLQAGLFDNVGEAIVGTWQQDGLKGFFRGTGATLCREVPFYVVGMGLYGESKKVAER FLRRELEPWETICVGALSGGLTAVLTTPFDVMKTRMMTAPRGRHIPMSFVAYSILRREGPLGLFKGALPRFFWIAPLGAMNFAGYELARKAMTKRAEQER QAAASEVVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	0	1
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	1.4	0.9709
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	1.4	0.9607
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	2.8	0.9544
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	3.5	0.9577
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	3.9	0.9520
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	5.3	0.9397
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	6.0	0.9430
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	6.2	0.9035
AT1G28260			Telomerase activating protein ...		Lus10015430 [exp]	6.2	0.9186
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	6.8	0.8968

Compare expression of checked genes

Lus10023493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.