Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040376 [exp] 275 / 3e-92 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1) Lus10041416 [exp] 128 / 2e-36 AT4G30230 61 / 5e-11 unknown protein Lus10036511 [exp] 112 / 2e-30 AT4G30230 61 / 8e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G218300 [exp] 58 / 4e-10 AT4G30230 48 / 2e-06 unknown protein Potri.008G043300 [exp] 54 / 1e-08 AT4G30230 50 / 4e-07 unknown protein Potri.010G218400 [exp] 47 / 2e-06 ND / Potri.006G168400 [exp] 43 / 8e-05 AT4G30230 94 / 8e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023495 pacid=23160527 polypeptide=Lus10023495 locus=Lus10023495.g ID=Lus10023495.BGIv1.0 annot-version=v1.0 ATGGACCTTGATCATCACCAGCCTTCTTATGATCCAGAAGCCGACGAGGACCACGAAACCCTTTCGCTCCGCGATCTCCCTTTATCGACCACCAGCAGCT GCAGCAATAGTAGTAGCACTTGCGAAGAAAGCAATCTGCATGATCATCAACAGGATACGTTTGAGTTCTTCAGTGGAGACTTCAATCCTTCTTCCTCTGA TAACATCATATTCTGTGGGAAGATTATTCCATATAGAGGTCCAAAACCTGCCGAGGACGATCACAAGAAGAAAGCCACCAAAAGCGAACCAAGATCAGAT CTTTATCCTAATCATGGTCACCTAAACAGGGTTTGGTCAATACCCTTGTCCACGAAGAGCAGCGAATTCGAGACGAAGAGGGTGGCTTCGAGGAAATCGA GATGGTACTTTCTTGCATTCGGAGTAGGGAAGGTTCCGGTGAAGATGGATCTTGATGATATGAAGTTCAGACAGAGCAGGAAGATGAGCAGTAGTAGTTA TAATTACAGCAGCAGGCAAAAGTTTGAGCCAAGTAGGAAGAGGAGCTCTAGAGGGTTGCTTGGGATTTTGGGATGCAGCAGAAGAGAAGATGCCAATTCC ATGGTTAAACCCTCACTTGTTTGCATACCAAGTTTGTGA
AA sequence Show only first row Show all	>Lus10023495 pacid=23160527 polypeptide=Lus10023495 locus=Lus10023495.g ID=Lus10023495.BGIv1.0 annot-version=v1.0 MDLDHHQPSYDPEADEDHETLSLRDLPLSTTSSCSNSSSTCEESNLHDHQQDTFEFFSGDFNPSSSDNIIFCGKIIPYRGPKPAEDDHKKKATKSEPRSD LYPNHGHLNRVWSIPLSTKSSEFETKRVASRKSRWYFLAFGVGKVPVKMDLDDMKFRQSRKMSSSSYNYSSRQKFEPSRKRSSRGLLGILGCSRREDANS MVKPSLVCIPSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023495 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	1.4	0.9487
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	1.7	0.9309
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	8.7	0.9334
					Lus10040377 [exp]	14.5	0.9173
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	19.6	0.9273
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	20.2	0.8795
AT1G11340			S-locus lectin protein kinase ...		Lus10030767 [exp]	20.5	0.9289
AT5G42500			Disease resistance-responsive ...		Lus10032939 [exp]	22.4	0.8976
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	26.9	0.8966
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	28.6	0.9225

Compare expression of checked genes

Lus10023495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.