Plant FIBer expression Database

Lus10023496 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040377
[exp]
299 / 8e-103 ND /
Lus10036512
[exp]
79 / 6e-17 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10023496 pacid=23160480 polypeptide=Lus10023496 locus=Lus10023496.g ID=Lus10023496.BGIv1.0 annot-version=v1.0
ATGAATTCCCAGCATCTTACTCTGCCACTAGCCCCTCACCACTACACCCTAAACAGCGCGGACGAAACAACGAACCACGACGATGATTTCAATGATCTTG
AGGATACCCTTTCGCTCTCTGACCTCCCCCTCCACAGCAGCAACACCGACCGTGCTGCTGCCGAGGGAGAGGCGGCAGAGGATTTGTCCGACGACGATGA
CGAGGAATTCGAGTTCTCTAGGGAGTACTTGATGACTGCAAGCCGTGCTTATTCTCATGACAATAATTACAACAACAGCATTACTAGTAGTAATGGTGTT
GTGTTCTGCGGGAAGCTCATCGATTCCAGACAATCAATTATTGATCAAAACATTATCCCGAAGCAGAGTAATAAGAAACAGAGCATCCGTCGCCGTGGAT
TCTTCTCATGGAAATCACCATCATCATCTTCCTCTTCCTCATCATCTTCATCGTCGATTTCATCCTCGTTTTCTTGGTTTAGTTCATCGTCGAGTGGGTC
TCGTAAGTCGGAGAAGGCGAAGAGCAAGAGTGGGATGGGGTATTTGTGTTTAGGGATTGGGGTGGAATGGAAGTTTCCGGTGAGGAGTATGGATGTAAAG
GAGATTAAGATGAGGCAGAACAGGCGGATGAGTTTCAGCAATGTTGTTGACGAAGATGATGTTCGATCACCGGCAGAAAATTTGGCCGTCGTCGGTGCTA
AAAACTCTGGAAATGGGGTTTGGAGTTTGCTCGGGATTTTAGCCGGCGGCCGGCCCTAA
AA sequence
>Lus10023496 pacid=23160480 polypeptide=Lus10023496 locus=Lus10023496.g ID=Lus10023496.BGIv1.0 annot-version=v1.0
MNSQHLTLPLAPHHYTLNSADETTNHDDDFNDLEDTLSLSDLPLHSSNTDRAAAEGEAAEDLSDDDDEEFEFSREYLMTASRAYSHDNNYNNSITSSNGV
VFCGKLIDSRQSIIDQNIIPKQSNKKQSIRRRGFFSWKSPSSSSSSSSSSSSISSSFSWFSSSSSGSRKSEKAKSKSGMGYLCLGIGVEWKFPVRSMDVK
EIKMRQNRRMSFSNVVDEDDVRSPAENLAVVGAKNSGNGVWSLLGILAGGRP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10023496
[exp]
0 1
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Lus10040115
[exp]
9.2 0.8477
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Lus10035258
[exp]
17.0 0.8964
AT1G62510 Bifunctional inhibitor/lipid-t... Lus10001493
[exp]
55.7 0.8010
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10003459
[exp]
63.2 0.7932
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Lus10019801
[exp]
76.2 0.8138
AT2G47730 GST6, ATGSTF5, ... Arabidopsis thaliana glutathio... Lus10037121
[exp]
77.3 0.8359
AT2G38870 Serine protease inhibitor, pot... Lus10024870
[exp]
80.2 0.8291
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Lus10040300
[exp]
81.9 0.8183
AT1G73260 ATKTI1 ARABIDOPSIS THALIANA KUNITZ TR... Lus10029429
[exp]
99.1 0.8394
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Lus10042486
[exp]
113.4 0.8289

Lus10023496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.