Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35790 210 / 3e-68 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040379 [exp] 345 / 3e-121 AT2G35790 266 / 3e-90 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042800 [exp] 241 / 2e-80 AT2G35790 231 / 1e-76 unknown protein Potri.010G219400 [exp] 236 / 3e-78 AT2G35790 243 / 2e-81 unknown protein Potri.010G219000 [exp] 231 / 1e-75 AT2G35790 239 / 3e-79 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06979 [flax] [poplar] TMEM70 Assembly, mitochondrial proton-transport ATP synth complex
Representative CDS sequence Show only first row Show all	>Lus10023498 pacid=23160497 polypeptide=Lus10023498 locus=Lus10023498.g ID=Lus10023498.BGIv1.0 annot-version=v1.0 ATGGGACGATCAGCTATCCTCCACTTGATCCGATCTCAAACCAGATCCATATCTCCCGCCTCTTTCAGGAGCTCACCTTCTTCAGGCTATCAAGCTCACA GGACCATCACATCTTTTAGCCATCAAAACGCTAAACCGAGCGTCCTGCCTACTGTTACCTCTCAGACAAGATGGGCTTCTCAAGCTGCTGCTGCAGAAGA AGACGACCGTAGGATCTCGATCGGACCACGCAAGGACAAAGAACAAAAACCTCAAGAGGAGGACGAAAACGATTCCGGAGTCGTCTACCGCGGTCCAATA TCATCCACGATCAAGAAAGTGAAGATGCTCTCGCTGTCCACCTGCTGTCTGTCGGTTTCCCTCGGCCCTGTCATCACTTTCATGACATCGACGGATTCGA ACGTCATCCTGAAGGGGGCAGTTGCGTCTTCCGTGATTTTCTTCAGTGCCTCAACTACTGCCGCGCTGCATTGGTTCGTGAGCCCTTACATTCACAAGCT GAGGTGGCAGCCGGGTTCGGACAGCTTTGTGGCAGAGCAGATGTCGTGGCTGGGCACTTACGTTCCGGAGACCATCAGGTTTGCGGACATTCGTCCGGCA GAGACCAACCGGCCGTACGTGACGTTTATGGCGAATAAGAAGTTCTACTTTATCGACACGGAGCACTGCCAGAACAAGGCGTTGCTGGCTAGACTCACCC CACAGAAACAGGAATCCGCCTTCAAGAACCTATGA
AA sequence Show only first row Show all	>Lus10023498 pacid=23160497 polypeptide=Lus10023498 locus=Lus10023498.g ID=Lus10023498.BGIv1.0 annot-version=v1.0 MGRSAILHLIRSQTRSISPASFRSSPSSGYQAHRTITSFSHQNAKPSVLPTVTSQTRWASQAAAAEEDDRRISIGPRKDKEQKPQEEDENDSGVVYRGPI SSTIKKVKMLSLSTCCLSVSLGPVITFMTSTDSNVILKGAVASSVIFFSASTTAALHWFVSPYIHKLRWQPGSDSFVAEQMSWLGTYVPETIRFADIRPA ETNRPYVTFMANKKFYFIDTEHCQNKALLARLTPQKQESAFKNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35790			unknown protein		Lus10023498 [exp]	0	1
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	2.8	0.8610
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	2.8	0.8542
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	9.5	0.8228
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	9.8	0.8362
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	9.9	0.8168
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	13.0	0.8247
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	13.1	0.8332
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	15.5	0.8031
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	17.0	0.8150
AT4G22720			Actin-like ATPase superfamily ...		Lus10029108 [exp]	17.9	0.7622

Compare expression of checked genes

Lus10023498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.