Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 389 / 5e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 363 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06650 361 / 8e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 352 / 2e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 347 / 5e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 344 / 1e-116 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 340 / 2e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G25450 340 / 2e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 340 / 2e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 339 / 4e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040380 [exp] 609 / 0 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040382 [exp] 607 / 0 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 402 / 5e-140 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022190 [exp] 389 / 1e-135 AT1G06620 323 / 6e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 357 / 7e-122 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 356 / 9e-122 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 354 / 7e-121 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 351 / 1e-119 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 350 / 2e-119 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165400 [exp] 437 / 1e-153 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 419 / 1e-146 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 377 / 6e-130 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 370 / 2e-127 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 338 / 1e-114 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073232 [exp] 330 / 1e-111 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 318 / 6e-107 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 287 / 1e-94 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 282 / 3e-92 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 271 / 1e-88 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023499 pacid=23160518 polypeptide=Lus10023499 locus=Lus10023499.g ID=Lus10023499.BGIv1.0 annot-version=v1.0 ATGGATAGTAGTACCAAACAGGCAGAGATTTCGCAGAGACATGTCGAACTGAAGGCTTTCGATGATACCAAATGCGGCGTGAAAGGCCTTGTCGATGCTG GAATCAAGCAACTCCCTGGAATATTCAAGCACCATTCGAAGGCGGAACCAGCCGTACTCTCGAGGGATGATGCTGCCAAATTGGCCATACCGGTCATTGA CTTTCGGGGCATCCACGAGGATCCACGTGCACGTCTCGATGCCATGAAGAAACTCCACGATGCTTGTTCAGAATGGGGATTCTTCCAGGTGATCAACCAC GGAATCGATGTTTCACTTCTCGAGAGTGTGATCGATGGGGTCCGAAAGTTTCACGAGCAGGATGATGAGGCCAAGAAAGAGATGTACAGTAGGGATCCGA CCAAGGATGTATCGTACAATACCAACTTCGATTTGTACCAAGCTTCCGCAGCTAACTGGAGAGACACTCTCTACTGCATTATGGCGCCCGTCCATCCACC CCCTGAGCATTTCCCTCCCATTTGCAGAGATGTAATAATCAACTACTCAAGAGAAGTAATGGAACTGGGGAGAACCATTTTCGAGATGATGTCGGAAGCT CTGGGGCTTGAATCAAACCACCTAAGAGAGATGGGGTGCAGTGATGGACTTTTATTGTGTGGTCACTACTACCCGGAATGCCCAGAGCCAGATTCGACAT TCGGAATCGCCAAACACACGGACAGTGGTTTCCTGACAGTGCTTCTCCAAGACCAATCGGGAGGACTGCAGGCCCTCTACCGGGGCCAATGGGTCGACGT TAAACCCATACCCGGATCCTTAGTCATCAATGTGGCAGACATGTTTCAGCTGATAACGAACGACAAGTACAAAAGCGTGTACCATAGAGTTGTGGCGAAG AGCACTGGACCGGCTAGGGTTTCGATCCCTTGCTTTTTGAGAATACATCATATGATGGAAGGTAGTGAGAGGGTGTATGAACCGATCAAGGAGCTGGTGA CGGAGGATAGTCCGGCGATATACAAGGGGACGAGCTTACATGACTATGTGACCAGCGTCTACTCCGTTGGACTTGACGGGGCCAGTAAACTGGATTATTT GAAGATATGA
AA sequence Show only first row Show all	>Lus10023499 pacid=23160518 polypeptide=Lus10023499 locus=Lus10023499.g ID=Lus10023499.BGIv1.0 annot-version=v1.0 MDSSTKQAEISQRHVELKAFDDTKCGVKGLVDAGIKQLPGIFKHHSKAEPAVLSRDDAAKLAIPVIDFRGIHEDPRARLDAMKKLHDACSEWGFFQVINH GIDVSLLESVIDGVRKFHEQDDEAKKEMYSRDPTKDVSYNTNFDLYQASAANWRDTLYCIMAPVHPPPEHFPPICRDVIINYSREVMELGRTIFEMMSEA LGLESNHLREMGCSDGLLLCGHYYPECPEPDSTFGIAKHTDSGFLTVLLQDQSGGLQALYRGQWVDVKPIPGSLVINVADMFQLITNDKYKSVYHRVVAK STGPARVSIPCFLRIHHMMEGSERVYEPIKELVTEDSPAIYKGTSLHDYVTSVYSVGLDGASKLDYLKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10023499 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10041141 [exp]	5.7	0.7516
					Lus10011725 [exp]	7.4	0.8080
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10016518 [exp]	14.8	0.7729
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	18.6	0.7970
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	19.1	0.7821
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	20.8	0.7712
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	23.1	0.7837
					Lus10010602 [exp]	29.0	0.6365
AT5G16030			unknown protein		Lus10017573 [exp]	32.0	0.7585
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10006046 [exp]	34.9	0.5974

Compare expression of checked genes

Lus10023499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.