Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52310 606 / 0 protein kinase family protein / C-type lectin domain-containing protein (.1) AT1G52540 201 / 1e-59 Protein kinase superfamily protein (.1) AT3G15890 201 / 2e-59 Protein kinase superfamily protein (.1) AT5G02800 195 / 4e-57 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G26150 200 / 6e-56 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 199 / 8e-56 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G16670 189 / 7e-55 Protein kinase superfamily protein (.1) AT4G32710 189 / 1e-54 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT3G20530 189 / 1e-54 Protein kinase superfamily protein (.1) AT4G01330 190 / 3e-54 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040381 [exp] 982 / 0 AT1G52310 657 / 0.0 protein kinase family protein / C-type lectin domain-containing protein (.1) Lus10011148 [exp] 210 / 1e-62 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 210 / 2e-62 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10011490 [exp] 203 / 3e-60 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10040050 [exp] 199 / 3e-58 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10014019 [exp] 197 / 3e-57 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 195 / 4e-57 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10001323 [exp] 195 / 1e-56 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10006985 [exp] 194 / 1e-56 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160300 [exp] 714 / 0 AT1G52310 703 / 0.0 protein kinase family protein / C-type lectin domain-containing protein (.1) Potri.003G032100 [exp] 204 / 1e-60 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 201 / 3e-59 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 197 / 5e-58 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 197 / 1e-57 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 196 / 1e-57 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 195 / 5e-57 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 203 / 6e-57 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 202 / 7e-57 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 200 / 4e-56 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0056 [flax] [poplar] C_Lectin PF00059 [flax] [poplar] Lectin_C Lectin C-type domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023500 pacid=23160533 polypeptide=Lus10023500 locus=Lus10023500.g ID=Lus10023500.BGIv1.0 annot-version=v1.0 ATGGGTCTTGTCACTCTGCAGTTTCTGGTGATTTTGGCTCTCTGTGTTGCTTTGGAGATTGCCCCATCCCAAGGGAAACACGATGATGCTGTTGGAACGG ATTCAGGGAATGCAGGCAGCAAAGTCGGTACAGGATGGTGCCCTTCCGGTTGGGAACCTAACATGAATAGAACTACATGCTTCAAGTACATTGGAGATAT GCAGACATGGGAGGAGTCAGAAACTCGGTGCAAAAGCCATGGAGGACACTTGGCATCTCTGTCTTCATATCAAGAACTAGACTTTGTCCAAAGGTTGTTT GGACAGAGTGCCTATGGTGGCTGTTGGGTTGGCGGACAAGGAGTAGGGAACTTAAGTATTGGTTTTACATGGAAGTGGTCAGATAATACGACAAGTTGGA ATCACTCGCTTTTCGGTCGAGAGCGAAACGATACTACCGTTGAGTCTTGTACATTGCTGACAAATGGAAGCACACGTATTATGAGAGAACGATGCAATGC ATCTCATTCTTCGATTTGTATGCTCAACTCCGAGAAGAAATGTTACCATATGCATTGCCACAGGGAGTATCTCATCATTCTTGCAGTTGTAAGTGGACTA ATCCTCACTGCTACTTTAGCTGTTGTGATTTGGCTGCTTGCATTCCGTCGCAACAAGAAGAGTCGAAAATCCCGTAAAACATCAAATCCATCTTCTGCCA CCACTGCCTTAGTTGCTCCATCATGGAAAGTCTTCTCAAAAGAAGAACTCAAGTCTTCAACAAAGAATTTCAGCGAGGAGAACCGTCTTCATGGAGATGC TAAAACCGGCGGAACATACAGTGGCCTTCTACCTGATGGAACTAGGGTGGCAGTGAAGAGGCTGAAGAGATCTAGTTTCCAGAGAAAGAAGGAGTTCTAC TCAGAAATCGGAAGGGTTGCAAGGCTTCACAATCCGAACTTGGTGTCAATCAAAGGGTGCTGCTACGATCATGGTGACCGCTACATAGTTTATGACTTTA TTGTTAATGGCCCTCTGGATAGATGGCTACACCACATGCCGAGGGGAGGCAGGTGCTTGGACTGGAACACGAGGATGAAAATCGCCACAACTCTCGCTCA AGGAATCGCGTTTCTGCATGACAAAGTAAAGCCACACGTTGTGCACAGAGAAATCTGTGCTAGTAATGTGCTGCTCGACGAGGAATTCGGGGCCCACCTA ATGGGAGTCGGTCTGTCCAAGTTCGTCCCTTGGGAAGGAATGCAGGAGAAAACAGTGATGGCAGGTGGCACTTATGGGTATTTAGCTCCGGAGTTCGTCT ACGAGAACGAGCTCACAACCAAGAGTGACGTCTACAGTTTCGGAGTGCTGCTGCTGGAAATAGTCACCGGTCGTAGACCTGCACAGGCAGTTGATTCCGT AGGGTGGCAGAGCATATTCGAATGGGTGACACCTCTGGTGCAGGCAAACTGCTACTTGGAGCTCTTGGATCCTCATTTATCGCTATCTTCTTCTTCGGAA GTTCCGGAAGCAGGTACCGTTCAGAAGGTGGTGGACCTCGTCTATGCTTGCACGCAACATGTGCCGTCGATGCGGCCGAGAATGTCTCATGTTAATCATC AGCTGCTGCAGTTGTCTGGTTTAAAGTAA
AA sequence Show only first row Show all	>Lus10023500 pacid=23160533 polypeptide=Lus10023500 locus=Lus10023500.g ID=Lus10023500.BGIv1.0 annot-version=v1.0 MGLVTLQFLVILALCVALEIAPSQGKHDDAVGTDSGNAGSKVGTGWCPSGWEPNMNRTTCFKYIGDMQTWEESETRCKSHGGHLASLSSYQELDFVQRLF GQSAYGGCWVGGQGVGNLSIGFTWKWSDNTTSWNHSLFGRERNDTTVESCTLLTNGSTRIMRERCNASHSSICMLNSEKKCYHMHCHREYLIILAVVSGL ILTATLAVVIWLLAFRRNKKSRKSRKTSNPSSATTALVAPSWKVFSKEELKSSTKNFSEENRLHGDAKTGGTYSGLLPDGTRVAVKRLKRSSFQRKKEFY SEIGRVARLHNPNLVSIKGCCYDHGDRYIVYDFIVNGPLDRWLHHMPRGGRCLDWNTRMKIATTLAQGIAFLHDKVKPHVVHREICASNVLLDEEFGAHL MGVGLSKFVPWEGMQEKTVMAGGTYGYLAPEFVYENELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWVTPLVQANCYLELLDPHLSLSSSSE VPEAGTVQKVVDLVYACTQHVPSMRPRMSHVNHQLLQLSGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52310			protein kinase family protein ...		Lus10023500 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	10.4	0.7162
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	12.0	0.7078
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10036637 [exp]	18.6	0.6811
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	31.2	0.6652
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	37.6	0.6121
AT3G26590			MATE efflux family protein (.1...		Lus10006205 [exp]	42.7	0.6493
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	51.6	0.6108
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	80.5	0.6026
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	84.2	0.5505
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	86.3	0.5754

Compare expression of checked genes

Lus10023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.