Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50840 117 / 8e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040383 [exp] 405 / 4e-142 AT5G50840 451 / 4e-157 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219700 [exp] 192 / 5e-59 AT5G50840 454 / 4e-158 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09728 [flax] [poplar] Taxilin Myosin-like coiled-coil protein
Representative CDS sequence Show only first row Show all	>Lus10023501 pacid=23160564 polypeptide=Lus10023501 locus=Lus10023501.g ID=Lus10023501.BGIv1.0 annot-version=v1.0 ATGGATAATCTAGATGCAAATCAACTTCCTGAAGTGGACTCACTCCCAGATGGATTTGTTGACAGCTCCATGGAACTTGTGGCTCCTGCAACTCCAACTA TGGAACAAGAGAAGCTACCCACTCACAACAAGGACGATGATTCCGTGTCAAATCTTCGTTACCCTAATTTGGAATTGGAAGCAGGGCTGGAGCTTTCAAA TGAATCAACACCGAAGAGTGAAAGACCTCGAACTTTTCCTGTCCAGCTATCTGAGACTGATGGCTCTGATGCTTCAGGGCAAATGGTAGAATTACCCGTT GAACAGGATGAAGATATTGTGAGGATGCCTAATCAAGTTGCGGAGGAGCCTTCACGTAGAGGTACTAGTGACGAAGCAAAAGAAGGTGTTCACGGGGACA GACAAAGTTCAGAGAAAGCTGTTCCAGCAACTTCAGACTTGCAAAATGCAGATTTGAAGGAAATATCTTCCCCTGAACATATCGAGTTACAAGGAAGCAG AAAACAAGAATCCTCTGAAAGTAAACGTAAGAATGTGAAAAAGACCTTCAAATCCGAGAAGGAATTTCTGGAGTTCACTTTGAAGTATCAGCAAGTCTTG TCTGAAAGAGATTCTGCTATCATTGTGCGGGATAAGCTTGAGTCACTTTGCAGGGAGTTGCAACGTCAGAACAAAGTACTGATGGTATAA
AA sequence Show only first row Show all	>Lus10023501 pacid=23160564 polypeptide=Lus10023501 locus=Lus10023501.g ID=Lus10023501.BGIv1.0 annot-version=v1.0 MDNLDANQLPEVDSLPDGFVDSSMELVAPATPTMEQEKLPTHNKDDDSVSNLRYPNLELEAGLELSNESTPKSERPRTFPVQLSETDGSDASGQMVELPV EQDEDIVRMPNQVAEEPSRRGTSDEAKEGVHGDRQSSEKAVPATSDLQNADLKEISSPEHIELQGSRKQESSESKRKNVKKTFKSEKEFLEFTLKYQQVL SERDSAIIVRDKLESLCRELQRQNKVLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50840			unknown protein		Lus10023501 [exp]	0	1
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10025361 [exp]	3.6	0.8273
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	14.9	0.8742
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	16.7	0.8440
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	16.9	0.8165
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027533 [exp]	20.4	0.8462
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	22.0	0.8519
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	23.1	0.8386
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10021592 [exp]	27.7	0.8059
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	28.8	0.8480
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	29.5	0.8309

Compare expression of checked genes

Lus10023501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.