Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52270 294 / 6e-99 Transcription initiation factor IIF, beta subunit (.1) AT1G75510 266 / 3e-88 Transcription initiation factor IIF, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040084 [exp] 464 / 8e-166 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1) Lus10030963 [exp] 428 / 3e-152 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1) Lus10040384 [exp] 355 / 3e-123 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1) Lus10033190 [exp] 310 / 3e-105 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1) Lus10010631 [exp] 308 / 2e-104 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219800 [exp] 345 / 7e-119 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1) Potri.002G028900 [exp] 320 / 3e-109 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1) Potri.005G233800 [exp] 315 / 3e-107 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02270 [flax] [poplar] TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10023502 pacid=23160489 polypeptide=Lus10023502 locus=Lus10023502.g ID=Lus10023502.BGIv1.0 annot-version=v1.0 ATGGGAAAAAAGTTGAGAGCTTTCTGCAAATGCGAGATATTAGAGAGGAGAATAGTGGATCTAGCGCGTACCAAGAGATTTGAAGACGAAGAGAGTTGGG TCCGAAGAGGAAAACCAGACCTGCTGATACTGAAACTGGTGAAGCGTGTAGCAAAATTGCTTAGGGCAGCCCGTCCTGTTGCTCAAAGCCTGAAAACTCT GTTTTTCCCCTTTCTTCCTTTTCCTCCTACCATGGACGAAAGCGCGCATCAGCATCAGCATCAGCATCAGGCAAGCCCGGCATCAGCATCAACAACAAAA ACCAACACCCGACCCATTGGAGGGTTTCTAGAGATCAGCAAGGCCGAGAGGTCAGTCTGGCTCATGAAATGCCCTTCTCTCGTTTCCCACTCCCTCCGCT CTCCTCTGTCCACTAATGACCTCTCTTCCCCCGTCGCCAAAGCCATCGTTTCCGTCGACCCCCTCAACGCCAATGCCGACGATTCATCCACCCAGTTCAC CATGGAGTTGGCCGCGGAATCAGGGAATACACCAAAGTCATACGCTTTGGCAATGTCTAAGGACTTCGTTCCAATGTCTGTGTTTGCCGAGTCATCTCAA GGAAAAGTGTTTCTGGAAGGGAAGATCCTGAACAAATTCGACGTCAAGCCCCATTCCGAGAACCTTGAAATGTACGGTAAGCTATGTAGCGAAAGGACAA AGAAGTATATGACCAAGGACAGACAAGTCCAGGTTATTGATAATGACAATGGAACTCACATGAGACCCATGCCCGGAATGATGAAAACTTATTTCACCGT ACATGAGAAGAAGAAACCGCCGGCCAAAGCATCTGATACGAAAAGGACGAGAAGGGATCGCGGGCAGATGGAAGACATTATGTTCAAGCTATTCGAAAGG AAGCCGAATTGGAGTTTGAGACAACTTGTTCAAGAGACGGATCAGCCCAAACTGTTTCTGAAAGACATGTTGAAGGAGCCTTGCGTGTATAACAATAAGG GAAGTAACCAAGGTTCTTATGAGCTGAAGCCTGAATACAAAAAATTAAGTGAGAATCCAGCTGCATCATAA
AA sequence Show only first row Show all	>Lus10023502 pacid=23160489 polypeptide=Lus10023502 locus=Lus10023502.g ID=Lus10023502.BGIv1.0 annot-version=v1.0 MGKKLRAFCKCEILERRIVDLARTKRFEDEESWVRRGKPDLLILKLVKRVAKLLRAARPVAQSLKTLFFPFLPFPPTMDESAHQHQHQHQASPASASTTK TNTRPIGGFLEISKAERSVWLMKCPSLVSHSLRSPLSTNDLSSPVAKAIVSVDPLNANADDSSTQFTMELAAESGNTPKSYALAMSKDFVPMSVFAESSQ GKVFLEGKILNKFDVKPHSENLEMYGKLCSERTKKYMTKDRQVQVIDNDNGTHMRPMPGMMKTYFTVHEKKKPPAKASDTKRTRRDRGQMEDIMFKLFER KPNWSLRQLVQETDQPKLFLKDMLKEPCVYNNKGSNQGSYELKPEYKKLSENPAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	0	1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10043077 [exp]	3.9	0.8578
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	4.6	0.8591
AT3G18060			transducin family protein / WD...		Lus10042944 [exp]	5.4	0.8096
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	6.9	0.8561
					Lus10024189 [exp]	12.8	0.8584
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	25.9	0.8116
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	29.2	0.8539
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	30.3	0.8367
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10027282 [exp]	32.5	0.7952
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	32.9	0.7923

Compare expression of checked genes

Lus10023502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.