Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52260 499 / 5e-178 Pseudouridine synthase family protein (.1.2.3) AT5G51140 82 / 6e-17 Pseudouridine synthase family protein (.1.2) AT1G76050 82 / 6e-17 Pseudouridine synthase family protein (.1.2) AT3G19440 56 / 3e-08 Pseudouridine synthase family protein (.1) AT1G56345 48 / 4e-06 Pseudouridine synthase family protein (.1) AT1G78910 48 / 6e-06 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040385 [exp] 642 / 0 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) Lus10017250 [exp] 94 / 8e-21 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005619 [exp] 88 / 1e-18 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10022437 [exp] 74 / 4e-14 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10002811 [exp] 59 / 3e-09 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10027863 [exp] 57 / 9e-09 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10029848 [exp] 50 / 2e-06 AT1G56345 358 / 7e-124 Pseudouridine synthase family protein (.1) Lus10034804 [exp] 46 / 3e-05 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 46 / 4e-05 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042000 [exp] 530 / 0 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.002G016800 [exp] 91 / 3e-20 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.015G101300 [exp] 84 / 1e-17 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2) Potri.009G095700 [exp] 67 / 8e-12 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.004G228200 [exp] 44 / 0.0002 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1) Potri.013G009300 [exp] 43 / 0.0002 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10023503 pacid=23160574 polypeptide=Lus10023503 locus=Lus10023503.g ID=Lus10023503.BGIv1.0 annot-version=v1.0 ATGTCTCGTGAGTTCGGCATCCCGTGGCCGGAGCTCAACGACGGCTTGTTCTACAACGATGTCCTTCCTGCTTCCCAGTCCGGTATATCTCAAACACTCA TAGACTTCTACTCCAGTAATTACAAAAATTCAGCTCCCATAAAAGGTTGGCTGCAGAGAATTCACAATGGACAGATCACAGTTGATGGAGTTGTTGTAAA AGAACCAAGCACAATCCTCAGGGCTGGTTCTGCTTTGATTTATCATAGGCGTCCATGGAGAGAGCCTGATGCACCTTACGCTTTGGAAATACTATATGAA GATGATGAGATGGTTGCTTTCTACAAGCCTTCTGGTTTGCAAGTCTTGCCTGGTGGTCTATTTCAGCAGCGAACCGTTCTAACCCAACTCCAATGGTGGA CAGCCAGGGAAGGATCTTCCTCAGATAGCCATGGATCACATCCCGTTCCTGTACACCGCTTGGGAAGAGGCACATCAGGAATATTGCTTTGTGCAAAGTC TAAGCTCGCCAAAACTCAACTTGCTGCATATTTTGCTGAGGGGACATCTCTTATTGAAGGCAACAGCCTGGAGCCTGAGAAAGGAAGGAAAATCTTGAAG ATATACCGAGCCCTGGCTGATGGAATAGTCAGCGAGGACACGGTTGTAATCAGGCAACCGATCGGGGTAGTTCGTTATCCCAGGGTGGCTAAAGGACTAT ATGTTGCTTCTGCCTCAGGAAAGCCAGCATTGAGCAAAGTTCGAGTACTGGAGAGAGATCTACAAAGAAACTGCAGCTTGGTCGAGGTGAAGATTGAGTC AGGACGCCCACACCAAATCCGCATTCACCTTTCCTTCATAGGGCATCCACTAGTTGGCGATCCTCTCTACATCGCTGGAGGAAAGCCAAGTTGTCTCGAT TCCGAACTCTTAAATGAAGACCTCGCAGCAGACGGGGGATATGAAAAACCCACAAAGGCTGTGCCCGGAGACTGCGGTTACTACTTGCATGCACATCAAC TAACCCTTACACACCCATCATCTACCCTCAAGGTGATAAAGATCACAGCACCTCTTCCACCGATCCTACGAACCAGCTCAGAGGCCCAACTTTGA
AA sequence Show only first row Show all	>Lus10023503 pacid=23160574 polypeptide=Lus10023503 locus=Lus10023503.g ID=Lus10023503.BGIv1.0 annot-version=v1.0 MSREFGIPWPELNDGLFYNDVLPASQSGISQTLIDFYSSNYKNSAPIKGWLQRIHNGQITVDGVVVKEPSTILRAGSALIYHRRPWREPDAPYALEILYE DDEMVAFYKPSGLQVLPGGLFQQRTVLTQLQWWTAREGSSSDSHGSHPVPVHRLGRGTSGILLCAKSKLAKTQLAAYFAEGTSLIEGNSLEPEKGRKILK IYRALADGIVSEDTVVIRQPIGVVRYPRVAKGLYVASASGKPALSKVRVLERDLQRNCSLVEVKIESGRPHQIRIHLSFIGHPLVGDPLYIAGGKPSCLD SELLNEDLAADGGYEKPTKAVPGDCGYYLHAHQLTLTHPSSTLKVIKITAPLPPILRTSSEAQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52260			Pseudouridine synthase family ...		Lus10023503 [exp]	0	1
AT1G15320			unknown protein		Lus10025746 [exp]	1.0	0.8586
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025507 [exp]	7.7	0.7833
AT4G14990			Topoisomerase II-associated pr...		Lus10010445 [exp]	10.2	0.7375
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	10.9	0.7795
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	12.6	0.8212
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	19.5	0.8287
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	40.8	0.7817
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	46.5	0.7590
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10027993 [exp]	51.8	0.7615
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10035424 [exp]	52.2	0.7686

Compare expression of checked genes

Lus10023503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.