Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07990 717 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 672 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30610 537 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G30810 534 / 0 SCPL29 serine carboxypeptidase-like 29 (.1) AT2G24000 505 / 2e-177 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G02110 504 / 5e-177 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35770 491 / 4e-172 SCPL28 serine carboxypeptidase-like 28 (.1) AT2G24010 467 / 7e-163 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G63470 450 / 1e-155 SCPL40 serine carboxypeptidase-like 40 (.1) AT5G23210 450 / 2e-155 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040387 [exp] 922 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 558 / 0 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10019954 [exp] 527 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 526 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 516 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10010190 [exp] 439 / 3e-151 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 436 / 6e-150 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 404 / 1e-137 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 395 / 2e-134 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041800 [exp] 790 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 790 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220200 [exp] 610 / 0 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 600 / 0 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.018G103100 [exp] 553 / 0 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.006G183200 [exp] 542 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 540 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 513 / 1e-180 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 513 / 2e-180 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.001G261100 [exp] 470 / 2e-163 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10023505 pacid=23160544 polypeptide=Lus10023505 locus=Lus10023505.g ID=Lus10023505.BGIv1.0 annot-version=v1.0 ATGGGTCGTTCCATATTCTTTGTTCTGTGTGTCTCTTCCTTTTTCTTCATTTGTTGCTGCACATCTGCCCCACTTCAAGATCAGGAGAGAGACAAGATTG ATTCTTTGCCAGGGCAGCCTGAAAATGTAGATTTCAATCAGTACTCCGGTTACGTTACTGTGAACCAAAAGGCTGGAAGGGCTTTATTTTACTGGTTTGT GGAGTCTCCAAAAAGCAGGGAGCCTGATTCAAGGCCACTTGTTCTTTGGCTCAATGGTGGTCCTGGTTGCTCCTCGGTTGCTTATGGAGCTGCTGAAGAA ATTGGACCTTTCCACATCAGGGCAGATGGGAAAAGCCTTTACTTGAACCCTTATTCTTGGAACAAGTTGGCCAATTTGCTGTTCCTTGAATCGCCAGCTG GAGTTGGGTTTTCATATTCCAATACAACATCAGATTATTACAAGGCTGGTGATAAGAGCACTGCTGCAGATTCATATACATTTCTTGTCAATTGGTTTGA GAGGTTTCCTCAGTACAAACATAGAGAATTCTACATCGCTGGAGAAAGCTATGCAGGGCATTATGTTCCTCAGTTGTCTCAGGTTATATATGAAAAGAAC ATTGGAGTTAAGAACCCTGTGATTAACTTCAAGGGATTTATGGTTGGAAATGCAGTCACAGATGATTACCATGATTACATTGGCACCTTTGAGTACTGGT GGACTCATGGTCTGATTTCAGATTCTACCTATAAGATATTGCGTGATAGTTGTGATAAAGGTTCGTCTCAACACCCATCATCAGATTGTACCAAGGCCCT TAAAACTGCAGAAATCGAGCAAGGAAACATCGATCCGTACAACATTTTCACTCAACCTTGCAGCAGTGCTGCATCGCTCAAGCGCAATTTAAGGGGTCAT TATCCATGGATGTCGAGGGCGTATGATCCTTGCACTGAGAGGTATTCAAAGCAGTACTTCAACCTTCCTGAAGTTCAGAAAGCACTCCATGCAAATGTGA CTGGACTTCCTTACACCTGGGAAACATGCAGTGACATTGTAGGGATTTACTGGGCAGATTCCCCACTTTCCATGCTGCCTATATATAAGCAACTCATTGC TGCTGGTGTCAGGATATGGGTCTTTAGTGGAGACACAGATTCAGTGGTTCCTGTGACTGCGACGCGATACTCCATTGATGCACTGAAGCTACCCACCATC AGCAACTGGTATCCATGGTACGACAATGGAAGGGTTGGTGGATGGAGCCAAGTATACAAAGGGCTGACATTCGCGACAGTAACAGGAGCTGGACATGAAG TGCCTCTCCATCGCCCTAGACAAGCTTTCATTCTTTTCAGATCGTTTCTGGAGAACAAGGCGCTTGCCTAG
AA sequence Show only first row Show all	>Lus10023505 pacid=23160544 polypeptide=Lus10023505 locus=Lus10023505.g ID=Lus10023505.BGIv1.0 annot-version=v1.0 MGRSIFFVLCVSSFFFICCCTSAPLQDQERDKIDSLPGQPENVDFNQYSGYVTVNQKAGRALFYWFVESPKSREPDSRPLVLWLNGGPGCSSVAYGAAEE IGPFHIRADGKSLYLNPYSWNKLANLLFLESPAGVGFSYSNTTSDYYKAGDKSTAADSYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLSQVIYEKN IGVKNPVINFKGFMVGNAVTDDYHDYIGTFEYWWTHGLISDSTYKILRDSCDKGSSQHPSSDCTKALKTAEIEQGNIDPYNIFTQPCSSAASLKRNLRGH YPWMSRAYDPCTERYSKQYFNLPEVQKALHANVTGLPYTWETCSDIVGIYWADSPLSMLPIYKQLIAAGVRIWVFSGDTDSVVPVTATRYSIDALKLPTI SNWYPWYDNGRVGGWSQVYKGLTFATVTGAGHEVPLHRPRQAFILFRSFLENKALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	0	1
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	4.4	0.8572
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	4.7	0.8543
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	6.8	0.7751
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	7.7	0.8332
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	8.5	0.7601
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	8.7	0.8291
AT3G07700			Protein kinase superfamily pro...		Lus10012317 [exp]	9.2	0.7074
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	10.9	0.8248
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	11.6	0.8357
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	12.0	0.8263

Compare expression of checked genes

Lus10023505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.