Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) AT2G15530 104 / 2e-23 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 99 / 1e-21 RING/U-box superfamily protein (.1) AT1G17970 96 / 2e-21 RING/U-box superfamily protein (.1) AT3G15070 96 / 6e-21 RING/U-box superfamily protein (.1.2) AT1G73760 94 / 1e-20 RING/U-box superfamily protein (.1) AT5G42940 94 / 6e-20 RING/U-box superfamily protein (.1) AT5G67120 87 / 8e-19 RING/U-box superfamily protein (.1) AT5G10650 88 / 3e-18 RING/U-box superfamily protein (.1.2) AT1G53190 86 / 9e-18 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040389 [exp] 1023 / 0 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10024810 [exp] 102 / 2e-22 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10010372 [exp] 100 / 8e-22 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10026941 [exp] 90 / 6e-19 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10013497 [exp] 85 / 2e-18 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10007967 [exp] 85 / 3e-18 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10020145 [exp] 87 / 6e-18 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10021722 [exp] 83 / 3e-17 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10042443 [exp] 85 / 4e-17 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220700 [exp] 406 / 2e-136 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.008G041201 [exp] 284 / 3e-90 AT2G37150 161 / 1e-43 RING/U-box superfamily protein (.1.2.3) Potri.001G373700 [exp] 100 / 3e-22 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 97 / 5e-21 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 96 / 9e-21 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.002G124300 [exp] 95 / 2e-20 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 92 / 4e-20 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 91 / 4e-19 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.018G005600 [exp] 90 / 7e-19 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.007G045500 [exp] 90 / 1e-18 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023507 pacid=23160504 polypeptide=Lus10023507 locus=Lus10023507.g ID=Lus10023507.BGIv1.0 annot-version=v1.0 ATGGGGGACAGACACTTCTCAAACGCATCAAATTTCTTTGAGAGAGATCGAGGGTGGGGCGAAAGAGATGTAGCTGCTGGAAGGTCCTTTATTTACACAG GAAGGGCTGTCACTCCTGAAAGTGTTTCTTATCTATATCCATCTGGTAACATCCTGAGAAGTGGACTCAACTGTGGTTCTCAACACACCTGGGGAAACGG ATCAGTGGAGCATTTGTCGACAAATAGGTCTGAAGGTCCACAAATTCATGGTCACCTTTCTGCCTCGTATGATACATTGCCACAGTTTGCAAGTGAGGGA AGCTTTCATCTAGAACCTGAGGCCAATGCTACCAATGCCTCCTCCAATATCTACAATGGTCAGCCTATGCATGAAGCTAATGGTGGCTTAATAGACTATC CAGCAGGCACCAGGAGAGGACGTTTCAAAAGAAAAGTTCCTAGCTTTATTCCACCATGTGCAACGGGTGCTACTACTGGATTTTATGGTGTGGGAAGTTC CTCCCACCCTAATGGGCTTCGGTTGGGTACACCTCCAGATTATAGACCTTTTCCTTCCAACTCCTTTCACTTACCTCCCCATGGGGGCGGGAGTTTGGCA ATTGGAGGTGAAGACTCTGGGAGCAATTCGAGAAGTATAGCTGATTCAGATCCTAACCCAACGAGAAGCTATTTTCAAAGTTATACTCCTGGTCCAAATG GTACAGCCGCTCATCTGCCAAACCATCATGGAGCAGTAAACATACATTGTTTAAATAACAATGCACCCACATACGGGCAGAATCATATTGGCATTTCTCC ACCTGCTCATGTTGGGTTTCAATTATCAGCAAATAATTCCCTGGGCCATGAGATGAATCCATATTATGCTGGTGGAAATGCAGCAGATACTAGTCGGTAC CAGCACCTCCATGAATCCTTATTGAGCAGAAATCCTATTCCGGCTCCACAATATTTTCATGGTCTACATGCCCTTGCTGCCAACGAGGATCAGGCAAACT ACTACCAAAGAGCCATACCTTCACAAAGGACTGATGCAATTTCCTTGCACCCTGGACAAGGACCAGCGATCTCGGGAATGATCCAACCGATTGTTTCGGA AAGTTTCCCTTCAAGATCTGCAAGACCCTTCTTAACCAGAGGCTTGCATTACAGCCACAGAGAAGGAAGGTCCAGGATGGCACTCGAGAGATTGCAAGCA CGTTCAAATGCTGTGGATATGCACGATAGAATGGGAGGCGAGGAGCTACTTGCCTTGGGAGATAGCATAGGAAATGTCAACACTGGTTTATCTGATAATG TGATATCAGAATGCTTGTTGGAGAAGAAACACTCAACTTCAGAAAAAAACCTAGAAGATTCTTGTGCTATCTGCCTTGAAGAGTACAAGAAGGGGAGCAG GATCGGGAAGTTGCGAAAGTGTGGGCATGAGTATCACATAGGCTGCATCAAGAAGTGGCTAACTGTGAAGAACTCGTGCCCCATCTGCAAAGGACCGGCA GCACCTATTCCGAACGCTTCGGAAAATCAAATATGGGGATTTGAGTCGGGTCTGTCGATCTTATCCGTGGGATCATAA
AA sequence Show only first row Show all	>Lus10023507 pacid=23160504 polypeptide=Lus10023507 locus=Lus10023507.g ID=Lus10023507.BGIv1.0 annot-version=v1.0 MGDRHFSNASNFFERDRGWGERDVAAGRSFIYTGRAVTPESVSYLYPSGNILRSGLNCGSQHTWGNGSVEHLSTNRSEGPQIHGHLSASYDTLPQFASEG SFHLEPEANATNASSNIYNGQPMHEANGGLIDYPAGTRRGRFKRKVPSFIPPCATGATTGFYGVGSSSHPNGLRLGTPPDYRPFPSNSFHLPPHGGGSLA IGGEDSGSNSRSIADSDPNPTRSYFQSYTPGPNGTAAHLPNHHGAVNIHCLNNNAPTYGQNHIGISPPAHVGFQLSANNSLGHEMNPYYAGGNAADTSRY QHLHESLLSRNPIPAPQYFHGLHALAANEDQANYYQRAIPSQRTDAISLHPGQGPAISGMIQPIVSESFPSRSARPFLTRGLHYSHREGRSRMALERLQA RSNAVDMHDRMGGEELLALGDSIGNVNTGLSDNVISECLLEKKHSTSEKNLEDSCAICLEEYKKGSRIGKLRKCGHEYHIGCIKKWLTVKNSCPICKGPA APIPNASENQIWGFESGLSILSVGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	0	1
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	1.0	0.9865
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	1.4	0.9750
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	1.7	0.9733
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	3.2	0.9701
AT5G66930			unknown protein		Lus10019643 [exp]	4.5	0.9557
AT1G48300			unknown protein		Lus10038034 [exp]	4.7	0.9601
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	5.2	0.9611
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	5.4	0.9540
AT2G24550			unknown protein		Lus10026939 [exp]	6.9	0.9600
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	7.5	0.9643

Compare expression of checked genes

Lus10023507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.