Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39190 481 / 2e-160 ATATH8 Protein kinase superfamily protein (.1.2) AT1G71810 219 / 3e-62 Protein kinase superfamily protein (.1) AT3G24190 197 / 9e-54 Protein kinase superfamily protein (.1) AT5G24970 163 / 3e-42 Protein kinase superfamily protein (.1.2) AT4G31390 159 / 4e-41 Protein kinase superfamily protein (.1.2) AT1G79600 158 / 2e-40 Protein kinase superfamily protein (.1) AT5G64940 140 / 2e-34 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 134 / 2e-32 Protein kinase superfamily protein (.1.2.3) AT5G50330 95 / 2e-20 Protein kinase superfamily protein (.1.2) AT5G05200 87 / 1e-17 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041406 [exp] 697 / 0 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 689 / 0 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040390 [exp] 502 / 3e-173 AT2G39190 322 / 1e-101 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 162 / 3e-41 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 162 / 3e-41 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10035701 [exp] 154 / 4e-39 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 149 / 1e-37 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 145 / 2e-36 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 145 / 3e-36 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221000 [exp] 570 / 0 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 209 / 2e-58 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 192 / 4e-52 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 162 / 3e-42 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 150 / 8e-38 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.002G000100 [exp] 146 / 1e-36 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.005G083200 [exp] 145 / 3e-36 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G014000 [exp] 143 / 1e-35 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 129 / 5e-31 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G276600 [exp] 94 / 2e-19 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10023508 pacid=23160554 polypeptide=Lus10023508 locus=Lus10023508.g ID=Lus10023508.BGIv1.0 annot-version=v1.0 ATGGCGGCGACAGCGTTTTCAGTCCTCACAACAACTGCTTCTGCACTCGGAAGCAGGAAGCACTCCCGAACGGTGACGCAGAGATGGAAGCCTCCGCGAG CAGTCATGGCTGTTGGCAATTTCAGTCACTTTGGGGAGGTGATGAGGAAGGATTTTGATTTCTTGAGTAAAGGAATAGGCAAGGGAATTGACTGGGCTAA CGATGCGTTTCGGATTCCGCAAGTGGCCAAGGCGGTTGATGATGTTGTTTGGATGCGTAACCTCGAGGATCCTGAAGCTGCGAAGATGGAGAAGCAAACT TGGCCGCAGCCTTCTTATCCAGAACTTTCTGGCACGGATTTACTCATGGCTGACCTCCAAGCTTTCAAAACCTATGCCGATTACTTCTACGGCTTGTCCA AGACTTGGTCCAAGCCACTTCCTGAAGCCTATGATCCGCAAACTGTTTCTGACTACTTCAATTGCAGGCCTCATGTGGTAGTCTTTCGACTTCTTGAGGT CTCAGTAGCCTTTGCTTCTGCAGCACTCAGAGTTCGAGCCTCTCGGATTGGGAATTCAACTTCGGAGAGTGATCTCGATGTGAATGGAAACACCCCGCCC TACAATGTTGGATTGGTCTTGAAGGAAACAATGGTTAACTTAGGTCCCACTTTTATAAAAGTTGGTCAATCCCTTTCCACAAGGCCAGACATAATTGGTT CTGAAATTTCCAAGGCTCTTTCTGGGCTGCATGATCAAATACCTCCCTTTCCTAGGACCATGGCGATGAAAATCATCGAAGAGGAGCTAGGAGCTCCTAT TGCATCATCTTTTAGCTATTTATCTGAGGAACCAGTTGGTGCAGCATCGTTTGGCCAGGTTTATCGTGGAAAGACTCTTGATGGTCGTATTGTGGCAGTG AAAGTTCAGCGGCCTAATCTGCGTCATGTGGTAGCTCGAGATATTTATATAATCCGGACTGGGCTGGGTGTGCTGCAAAAGATTGGGAACATAGAAAGTG ACCTACCTCGGTATGCTGATGAATTCGGAAAGGGTCTAGTTGGTGAATTAGATTACTCTATTGAAGCTGACAATGCATCCAGATTTCGGGAAGCACATTC TTCTTTCACTTTCATGCAAATTCCAAGGGTTTTCCGAGATCTAAGCCGGAAAAGAGTTCTGACGATGGAGTGGGTAGCCGGTGAAAGTCCAAATGATTTG CTTACTGTATCAACTTCCAACGCCAAGGATTCCATCTCAGAAAGAGAGAAGACTGAAGCAACTAGCCATTTACTTGATCTCGAGTTGGAAGATGCCTTAG GAGAGGTAGAATTCAGAGATGGAATTCCTGACATCAAGTTCAGTAAGTTTCTTAGTCATGTTGAGGTAACGGTATCCTTGATGCTCATTCTGAAGGTGCT AGGGAAAATATGGTCTTTGGCCATCAAGTATCGTTTCAGCATGCCTCCATATTACACCCTTGTTCTTCGTTCTCTTGCATCTTTGGAGGGTTTGGCAATA GCTGCAGACCCAAACTTCAAGACATTTGAAGCTGCATACCCTTATGTTGCCCAGAAACTGCTAACTGAAGATTCTCCCTCCACCAGGAAAATTCTGTATT CGGACGGGGCTTCGTTAATCCGACGAGCGGTCTCCAAGGAAGCAATGCCCTTGAGACAGCAACTGTGCAGGGTCATTGCTGATGTCATGCACCAATGGAT CAACAAAGAGACGAGGGCTCCATCTTCTTCCTCCAGATCGGTCGTTGATTATCAAGCAATCCTTAGAGATCGACGACTAAAAGTGATCTTTCTCAGAATA CTCGGCTCTACAAGGAAAGATCCTGTTCTGATGCTTAAGCTTTGCTGGACTTCATTTATCGTCATGGTCACTGCCTCAGCACTTGCATTTCGTCAAGCTC TGATCTCCTTATCCGAAACCTTCTTCAGCTCTCTGCCTCTTTCTCCCAAGCGCGTGGCTTTTACTCGTTGA
AA sequence Show only first row Show all	>Lus10023508 pacid=23160554 polypeptide=Lus10023508 locus=Lus10023508.g ID=Lus10023508.BGIv1.0 annot-version=v1.0 MAATAFSVLTTTASALGSRKHSRTVTQRWKPPRAVMAVGNFSHFGEVMRKDFDFLSKGIGKGIDWANDAFRIPQVAKAVDDVVWMRNLEDPEAAKMEKQT WPQPSYPELSGTDLLMADLQAFKTYADYFYGLSKTWSKPLPEAYDPQTVSDYFNCRPHVVVFRLLEVSVAFASAALRVRASRIGNSTSESDLDVNGNTPP YNVGLVLKETMVNLGPTFIKVGQSLSTRPDIIGSEISKALSGLHDQIPPFPRTMAMKIIEEELGAPIASSFSYLSEEPVGAASFGQVYRGKTLDGRIVAV KVQRPNLRHVVARDIYIIRTGLGVLQKIGNIESDLPRYADEFGKGLVGELDYSIEADNASRFREAHSSFTFMQIPRVFRDLSRKRVLTMEWVAGESPNDL LTVSTSNAKDSISEREKTEATSHLLDLELEDALGEVEFRDGIPDIKFSKFLSHVEVTVSLMLILKVLGKIWSLAIKYRFSMPPYYTLVLRSLASLEGLAI AADPNFKTFEAAYPYVAQKLLTEDSPSTRKILYSDGASLIRRAVSKEAMPLRQQLCRVIADVMHQWINKETRAPSSSSRSVVDYQAILRDRRLKVIFLRI LGSTRKDPVLMLKLCWTSFIVMVTASALAFRQALISLSETFFSSLPLSPKRVAFTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	0	1
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	1.4	0.9297
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	2.4	0.9244
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	7.1	0.9224
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	7.4	0.9088
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	7.7	0.8925
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	8.9	0.9179
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	9.8	0.8870
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	12.0	0.9019
AT2G23390			unknown protein		Lus10038137 [exp]	12.0	0.8953
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	17.5	0.9056

Compare expression of checked genes

Lus10023508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.