Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54890 362 / 7e-128 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT3G08940 155 / 2e-46 LHCB4.2 light harvesting complex photosystem II (.1.2) AT5G01530 155 / 4e-46 LHCB4.1 light harvesting complex photosystem II (.1) AT3G47470 149 / 4e-44 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G61470 140 / 7e-41 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT2G34430 137 / 2e-39 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT2G34420 137 / 3e-39 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT2G40100 137 / 4e-39 LHCB4.3 light harvesting complex photosystem II (.1.2) AT1G29920 136 / 5e-39 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 136 / 5e-39 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040391 [exp] 446 / 3e-161 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10021663 [exp] 154 / 7e-46 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10035512 [exp] 154 / 1e-45 AT3G08940 459 / 4e-165 light harvesting complex photosystem II (.1.2) Lus10001644 [exp] 153 / 1e-45 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10037836 [exp] 149 / 1e-43 AT2G40100 399 / 2e-141 light harvesting complex photosystem II (.1.2) Lus10028299 [exp] 138 / 1e-39 AT2G40100 412 / 7e-147 light harvesting complex photosystem II (.1.2) Lus10040191 [exp] 138 / 2e-39 AT2G40100 412 / 1e-146 light harvesting complex photosystem II (.1.2) Lus10011361 [exp] 137 / 4e-39 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10039912 [exp] 136 / 5e-39 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041000 [exp] 365 / 3e-129 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 361 / 9e-128 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.016G115200 [exp] 155 / 4e-46 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.015G062200 [exp] 147 / 1e-43 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.006G099500 [exp] 148 / 2e-43 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.006G139600 [exp] 139 / 3e-40 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.003G171500 [exp] 137 / 2e-39 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.019G063101 [exp] 137 / 3e-39 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.001G056700 [exp] 136 / 4e-39 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.008G067300 [exp] 134 / 4e-38 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10023509 pacid=23160622 polypeptide=Lus10023509 locus=Lus10023509.g ID=Lus10023509.BGIv1.0 annot-version=v1.0 ATGGCTGCCAATTCTCTGTTGAGCGGCCGCGCCATCACCACCACCGCATTCCCGTCTCTCCTCTCGTCCTCCAGGTCATCATTTTCAGGCCGCCTACCGG CCAGCATCGGCACCGGCAATGCCTCCTCAAGCCGATTAGTCGTGTCGGCTGGCGGATGGATGCCTGGTCAGCCCCGCCCTGATCACCTCGACGGATCTTC ACCCGGAGACTTCGGATTCGACCCGCTCGGGTTGGCCACCGTACCGGAGAACTTCGAGCGTTTCAAGGAGTCGGAGCTCATCCACTGCAGATGGGCTATG CTTGCTGTTCCAGGGATATTGGTGCCGGAGGCATTGGGGCTAGGAAACTGGGTGCAGGCTCAGGCATGGGCAGCTCTACCAGATGGTCAAGCTAGCTATT TGGGTCAGCCAGTACCATGGGGCACACTCCCGACCATCCTCGTGATCGAATTCTTGTCGATCGCATTCGTGGAGCACCAGCGGAGCATGGAGAAGGACCC AGAGAAGAAGAAGTACCCAGGAGGTGCATTCGACCCGCTCGGTTTCTCCAAGGACCCAGCCAAGTTCGAGGAGTACAAGCTCAAGGAGATCAAGAACGGT CGGCTGGCGTTGCTGGCATTTGTGGGGTTCTGCGTGCAGCAATCGGCGTACCCAGGGACTGGACCGTTGGAGAACTTGGCTACACACTTGGCTGATCCGT GGCACAAGAACATTGGGGATGTTCTTATCCCATTTTAA
AA sequence Show only first row Show all	>Lus10023509 pacid=23160622 polypeptide=Lus10023509 locus=Lus10023509.g ID=Lus10023509.BGIv1.0 annot-version=v1.0 MAANSLLSGRAITTTAFPSLLSSSRSSFSGRLPASIGTGNASSSRLVVSAGGWMPGQPRPDHLDGSSPGDFGFDPLGLATVPENFERFKESELIHCRWAM LAVPGILVPEALGLGNWVQAQAWAALPDGQASYLGQPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNG RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNIGDVLIPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	0	1
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	1.0	0.9858
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	2.0	0.9656
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	2.4	0.9603
AT1G75460			ATP-dependent protease La (LON...		Lus10024294 [exp]	3.5	0.9183
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	3.9	0.9521
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	4.0	0.9578
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	4.9	0.9374
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	8.1	0.9206
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	12.0	0.9258
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	12.7	0.9268

Compare expression of checked genes

Lus10023509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.