Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 309 / 6e-102 Protein kinase superfamily protein (.1) AT3G09010 302 / 3e-99 Protein kinase superfamily protein (.1) AT1G56145 290 / 8e-89 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 289 / 3e-88 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 289 / 3e-88 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 283 / 8e-86 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 276 / 2e-83 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 272 / 4e-82 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 271 / 6e-82 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 270 / 3e-81 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040392 [exp] 664 / 0 AT3G09010 323 / 2e-107 Protein kinase superfamily protein (.1) Lus10026503 [exp] 345 / 3e-116 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 342 / 3e-115 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10042460 [exp] 326 / 7e-109 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 323 / 3e-107 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042851 [exp] 319 / 2e-105 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10028149 [exp] 315 / 2e-104 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10004825 [exp] 294 / 3e-96 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10011193 [exp] 287 / 1e-93 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221400 [exp] 391 / 2e-134 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.008G040800 [exp] 335 / 3e-113 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 330 / 1e-110 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 328 / 2e-109 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 319 / 6e-106 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 321 / 9e-106 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 317 / 3e-105 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 314 / 4e-104 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 298 / 5e-98 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 294 / 1e-96 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023510 pacid=23160522 polypeptide=Lus10023510 locus=Lus10023510.g ID=Lus10023510.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTCCTGAGCAGCTTGAAGAAGAAGCTCCGAGATTCGTCGACGAGAAAAAGCACCAAGACAACTAGTAGCAGACGCAGCAAGAACACCAGCA AGTCATTGTCTTCCTATTTCTCCAAATGCTTCACTTCTTCTTCTTCTTCTTCCTCTGATCATCATATTCCGACAACTGACGACCACAAACAACATCCTGC AGCTTCTCCCTCTTCAGCAGCAGCAGGTGGAGCAGAAGGTGCAGGAAGTATGCTGGAAAATTCAAATGCATTCACATTCGAGGAACTGGATATGGCCACC AACCATTTCCATCCCTCAAACAGGATCGGGGAAGGTGGCTTCGGCTCAGTTTACAAGGGGAGGTTAAAAGATGGGAGAAGGGTGGCAATAAAGGTATTGT CAGCAGAGTCAAGACAAGGTGACAGGGAGTTCATGTCGGAATTAGCTACACTGTCTAACATTACCCACGAAAACCTCGTCCACCTCCTAGGAGGCTGTGT CAAAGGGCCTCGTAGAATGCTTGTCTACGAATACGTGGAGAAGGGCAACCTTTTCTATAATCTCCTGGATGAGAAGGGCAGGAGTAGTAGCATGTTCATC AGTTGGGAAGTGAGGAAGGAAATCGCAATGGGGATTGCAGCTGGACTTGCTTACTTGCACGAGGAGGTCAACCCTCATATAGTCCATCGTGATATCAAGG CCACCAACATACTCCTCGATCACAATCTTAGGCCGAAGATCTCTGATTTCGGGCTCTCCAAGTTCTTCCCGGATGGTATTACCCACATCACCACCCGAGT AGCAGGCACATTAGGGTACCTGGCACCGGAGTACGCAATAAGCGGGCATTTGACGAGGAAACTAGACGTGTACAGCTTCGGGGTTCTCCTCCTAGAAATA ATAAGCGGCCGAACCGCTGTGGACTTTGATCAAACACTTGGTGAGCAATACTTCCTAGTGGAGAAGGCGTATCAGCTCTACAAATCCAAACAGCTCCTCC AACTCGTGGATCCAACCCTCATCTTACACGACTCAAACACGCCGGAAGCAGAACGATTCCTCAGACTTGCTCTGCTCTGCCTACAGGAAAAGAGCTGCTT ACGCCCCACCATGTCAGCAGCTCTGAAGATGATGAGAAAAGATTCCACCACGACAACAGAGGAAGAGGAGATTGCGGAACCTGGGCTTATTGCAGACTTC ATGGCAGTTAAAATCAACCAGCAGCAAGATCGGCCAATGCAGGACAGCACGCCGAATTCTGCAGCTGGTACTCCGCAACGAGTGATTTCGTCCCCGCTTC GTAAATTTTAG
AA sequence Show only first row Show all	>Lus10023510 pacid=23160522 polypeptide=Lus10023510 locus=Lus10023510.g ID=Lus10023510.BGIv1.0 annot-version=v1.0 MEKVLSSLKKKLRDSSTRKSTKTTSSRRSKNTSKSLSSYFSKCFTSSSSSSSDHHIPTTDDHKQHPAASPSSAAAGGAEGAGSMLENSNAFTFEELDMAT NHFHPSNRIGEGGFGSVYKGRLKDGRRVAIKVLSAESRQGDREFMSELATLSNITHENLVHLLGGCVKGPRRMLVYEYVEKGNLFYNLLDEKGRSSSMFI SWEVRKEIAMGIAAGLAYLHEEVNPHIVHRDIKATNILLDHNLRPKISDFGLSKFFPDGITHITTRVAGTLGYLAPEYAISGHLTRKLDVYSFGVLLLEI ISGRTAVDFDQTLGEQYFLVEKAYQLYKSKQLLQLVDPTLILHDSNTPEAERFLRLALLCLQEKSCLRPTMSAALKMMRKDSTTTTEEEEIAEPGLIADF MAVKINQQQDRPMQDSTPNSAAGTPQRVISSPLRKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	0	1
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	1.4	0.9737
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	4.7	0.9533
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	6.0	0.9503
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	11.0	0.9370
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	12.0	0.9492
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	16.0	0.9382
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10008330 [exp]	17.0	0.8857
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	19.6	0.9422
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	25.0	0.9061
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	27.2	0.9310

Compare expression of checked genes

Lus10023510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.