Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17220 224 / 3e-74 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G03190 222 / 2e-73 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT2G30860 184 / 1e-58 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 183 / 4e-58 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G62760 170 / 5e-53 ATGSTF13 Glutathione S-transferase family protein (.1) AT2G02930 140 / 2e-41 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT4G02520 140 / 3e-41 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G47730 141 / 5e-41 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT1G02930 136 / 1e-39 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G49860 135 / 9e-39 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040393 [exp] 361 / 3e-128 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10020735 [exp] 208 / 5e-68 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 207 / 2e-67 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 199 / 4e-64 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 191 / 3e-61 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 191 / 4e-61 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 172 / 9e-54 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10005634 [exp] 155 / 6e-47 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10026643 [exp] 135 / 2e-39 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138800 [exp] 284 / 9e-98 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015200 [exp] 187 / 2e-59 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 173 / 3e-54 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G015100 [exp] 165 / 5e-51 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.014G132200 [exp] 164 / 2e-50 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207093 [exp] 152 / 5e-46 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 146 / 1e-43 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 146 / 2e-43 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.005G182000 [exp] 53 / 4e-08 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2) Potri.004G232600 [exp] 40 / 0.0007 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023511 pacid=23160612 polypeptide=Lus10023511 locus=Lus10023511.g ID=Lus10023511.BGIv1.0 annot-version=v1.0 ATGGTGGTGAAAGTGTATGGTCTGTTCAAGGCAGCATGTCCACAAAGGGTACTGGCTTCCATTCTGGAAAAAGAAGTTGACTTCCAAGTCGTCCCCGTCG ATGTCGACTCCGGCCACCAAAAACTCCCCCATTACCTCTCCAAACAGCTTCCTTTACCCTCTTTGTTTCTGTTGCCTTCCTTTTGGCAGCCATTCGGGCA GGTATCCTACATTGAGGATGGCGATTTTAAACTTTTCGAATCGAGGGCAATAATCCGGTACTACTCTGGGAAATACGCGGACAAGGGAGCGGACCTACTG GGCCGAACATTAGAAGAGAAGGCCCTGGCGGACCAGTGGCTGGAAGTGGAGGCCCATAACTTCAACGAGCCCGTTTACGCGGCGGTGCTGCAGCTGGTGA TTCTGCCGCGGATGGGGTTGAAGGGTGACGTGGCGGTGGTCCGAGACAGCGCGGAGAAGATAGGGAAGGTGCTTGACATCTATGAACGGAGGCTGTCGGA GACCAAGTACCTCGCCGGTGAAAATTTCACGCTGGCGGATCTCAGCCACCTTCCGGGAATGAGTTACTTGACGAACGAGGCTGGGATGGGCCACTTGGTG ACGGAGCGGAACAAAGTGAATGGTTGGTGGGAGGATATCTCCGGGCGTCCTGCTTGGAAGAAGCTGATGGCCATGGCCGCTGCAGCCGCCGCCGCCGATG TTTGA
AA sequence Show only first row Show all	>Lus10023511 pacid=23160612 polypeptide=Lus10023511 locus=Lus10023511.g ID=Lus10023511.BGIv1.0 annot-version=v1.0 MVVKVYGLFKAACPQRVLASILEKEVDFQVVPVDVDSGHQKLPHYLSKQLPLPSLFLLPSFWQPFGQVSYIEDGDFKLFESRAIIRYYSGKYADKGADLL GRTLEEKALADQWLEVEAHNFNEPVYAAVLQLVILPRMGLKGDVAVVRDSAEKIGKVLDIYERRLSETKYLAGENFTLADLSHLPGMSYLTNEAGMGHLV TERNKVNGWWEDISGRPAWKKLMAMAAAAAAADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Lus10023511 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	3.7	0.9368
					Lus10004437 [exp]	5.3	0.9368
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	6.5	0.9368
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	7.5	0.9368
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	8.4	0.9368
					Lus10021739 [exp]	9.2	0.9368
					Lus10039674 [exp]	9.9	0.9368
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	10.6	0.9368
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	11.2	0.9368
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	11.4	0.9186

Compare expression of checked genes

Lus10023511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.