Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54950 523 / 0 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 505 / 2e-175 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT2G39220 499 / 8e-174 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G63200 257 / 9e-81 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G37060 140 / 9e-37 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 126 / 7e-32 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT2G26560 120 / 2e-29 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT5G43590 114 / 2e-27 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37050 94 / 2e-20 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040394 [exp] 753 / 0 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 683 / 0 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 682 / 0 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10038349 [exp] 276 / 1e-87 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 195 / 4e-58 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10036212 [exp] 196 / 7e-58 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10038350 [exp] 183 / 3e-54 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10009340 [exp] 137 / 2e-35 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 117 / 4e-28 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221700 [exp] 623 / 0 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.008G040500 [exp] 622 / 0 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 318 / 7e-104 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 310 / 1e-100 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.005G210100 [exp] 260 / 5e-82 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 252 / 8e-79 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.007G042200 [exp] 143 / 2e-37 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.019G014401 [exp] 128 / 4e-32 AT4G37060 212 / 2e-64 phospholipase A IVB, PATATIN-like protein 5 (.1.2) Potri.002G128300 [exp] 127 / 6e-32 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033200 [exp] 119 / 3e-29 AT2G26560 533 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10023512 pacid=23160513 polypeptide=Lus10023512 locus=Lus10023512.g ID=Lus10023512.BGIv1.0 annot-version=v1.0 ATGGAAATCGCTTGTCACCAATCTTTAGAAATGCAAGAGCCCAGCATCGACACCGACAAACTCAGCTACGAAATCTTCTCCATCCTCGAAAGCAAGTTCC TTTTCGGCTATGACGATCAGAAGCTCTGGGTTCCAAAGCAAATCTCTCCGCCGCCACCGGTGGCGGAAAACAAACCAGAAACTCTGACTCCCTCAATTGC CGCCGCCGGAGACGGCGTCAATTCCATCAAAAACCAGCGAGGAAAAATCTGCATACTCTCCATCGACGGCGGAGGGATGAGAGGAATCCTCGCCGGAAAA GCTCTGGCGTATCTCGAACAGGCTTTGAAAACGAAATCGAACAATCCCGACGCGAGAATCTCCGATTACTTCGACGTCGCAGCGGGGACGGGTGTCGGCG GCATCTTCACGGCGATGCTCTTCGGGACCAGAGACCAGAGCCGTCCGATCATGAAAGCCGACGAAACATGGAAGTTTCTAGCGGAGAACGGGAAACGTTT CTACGGGTCGGGAAGCGACGGCGGGTTCCTGAAACGGGCGTTTAATAAAACCGGGTCGAGTTCAGCCGGGTTGGAAAAGGCGATGAAAGAGACTTTCGCG GAGAAGAAAGGTCGTCAGTTGACGCTCAAGGATACATTAAAGCCTGTTTTGATCCCTTTCTACGACCTTTCCAGTACGGCGCCTTTTCTCTTGTCTAGAG CCGACGCTCTGGAGACGGACAGTTTCGATTTCCGTCTATGGGAGGTTTGCCGGGCGACGTCGGCCGAACCGGGGGTATTCGACCCGGTTCAGTTGAAGTC AATCGACGGTCTGACCAGGTGTTTAGCCGTCGACGGCGGGTTGGCGATGAACAACCCGACGGCGGCGGCAATCACGCACGTGCTGCACAACAAACAAGAG TTCCCTTTCGTGAGAGGGGTGGAAGATCTGCTGGTGTTGTCGCTGGGTACTACTGGGCAGCTGTTGGAAGTGAGGTACGATTACGAGCAGGTGAAAACAT GGAGGGCCAAGCACTGGGCGAGGCCCATGGCGAGAATAGCCGGCGATGTTTCGGCTGATTCGGTGGACCAGGCGGTGGCCATGGCATTCGGTCAATATCG GAGCAGTAACTACGTCAGGATTCAGGCTGGGGGAGAGATGGTTAAAGGTTTCAATCCAAAGTTTTGTCCTCAATGGATATTCTTGGATTGGGGGGAACTT TGGGACAACGTTTTTGAGCTAGCTGGGAGTTTGGTTTATGCAATTGAATGCGAATGCTTTGTTTCAATATGTGGTGCATTGGTTAGCCAAGTAAGCCATG GAAATGGGGCGAACGGGTCCAGCCTAGGCAGGTGTGAAGCCAATGTTGACACCGACCCTGGTTCAAAGAACGTGAAAATGCTGGTGGGAATGGCAGAGGA GATGTTAAAGCAGAAAAATGTGGAGTCAGTGTTATTTGGGGGTAAGAGAATAGGAGAGCAGAGTAATTTCGAGAAGCTGGACTGGTTTGCAGGTGAACTT GTGCAGGAACATCAGAGGAGGAGCTGCAGAATTGCTCCCACTGTTTCTTTCAAGCAACTTACTACCAGAATTTAA
AA sequence Show only first row Show all	>Lus10023512 pacid=23160513 polypeptide=Lus10023512 locus=Lus10023512.g ID=Lus10023512.BGIv1.0 annot-version=v1.0 MEIACHQSLEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWVPKQISPPPPVAENKPETLTPSIAAAGDGVNSIKNQRGKICILSIDGGGMRGILAGK ALAYLEQALKTKSNNPDARISDYFDVAAGTGVGGIFTAMLFGTRDQSRPIMKADETWKFLAENGKRFYGSGSDGGFLKRAFNKTGSSSAGLEKAMKETFA EKKGRQLTLKDTLKPVLIPFYDLSSTAPFLLSRADALETDSFDFRLWEVCRATSAEPGVFDPVQLKSIDGLTRCLAVDGGLAMNNPTAAAITHVLHNKQE FPFVRGVEDLLVLSLGTTGQLLEVRYDYEQVKTWRAKHWARPMARIAGDVSADSVDQAVAMAFGQYRSSNYVRIQAGGEMVKGFNPKFCPQWIFLDWGEL WDNVFELAGSLVYAIECECFVSICGALVSQVSHGNGANGSSLGRCEANVDTDPGSKNVKMLVGMAEEMLKQKNVESVLFGGKRIGEQSNFEKLDWFAGEL VQEHQRRSCRIAPTVSFKQLTTRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	0	1
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	2.8	0.9235
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10031322 [exp]	3.9	0.9149
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10037084 [exp]	4.0	0.9094
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	4.5	0.9383
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	7.3	0.9114
AT1G74780			Nodulin-like / Major Facilitat...		Lus10042170 [exp]	8.8	0.8664
AT1G60160			Potassium transporter family p...		Lus10012993 [exp]	11.3	0.8957
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	13.5	0.9105
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	15.4	0.8954
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	20.2	0.9039

Compare expression of checked genes

Lus10023512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.