Plant FIBer expression Database

Lus10023513 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040396
[exp]
163 / 9e-52 AT5G54740 62 / 2e-12 seed storage albumin 5 (.1)
Lus10040395
[exp]
71 / 1e-15 AT4G27170 60 / 1e-11 seed storage albumin 4 (.1)
Lus10040397
[exp]
56 / 3e-10 ND 39 / 5e-04
Lus10040411
[exp]
49 / 3e-07 AT5G54740 59 / 3e-11 seed storage albumin 5 (.1)
Lus10031886
[exp]
40 / 0.0002 ND /
Lus10023514
[exp]
38 / 0.0006 AT5G54740 41 / 1e-05 seed storage albumin 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G134600
[exp]
55 / 6e-10 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info
Representative CDS sequence
>Lus10023513 pacid=23160568 polypeptide=Lus10023513 locus=Lus10023513.g ID=Lus10023513.BGIv1.0 annot-version=v1.0
ATGGCAAAGCTGATGAGCCTGGCAGCCGTAGCAACGGCATTCCTCTTCCTGATCGTGGTGGACGCATCCGTCCGAACCACAGTGATTATCGACGAGGAGA
CCAACCAAGGCCGCGGTGGAGGCCAAGGTGGCCAGGGACAGCAGCAGTCTTGCGAGCAGCAGATCCAGCAGCAAGACTTCCTGAGGAGCTGCCAGCAGTT
CATGTGGGAGAAAGTCCAGAGGGGCGGCCGCAGCCACTATTACAACCAGGGCCGTGGAGGAGGCGAACAGAGCCAGTACTTCGACAGCTGTTGTGACGAC
CTTAAGCAATTGAGCACCGGGTGCACATGCAGGGGACTTGAGCGTGCCATCGGCCAAATGAGGCAGGAAATCCAGCAGCAGGGACAGCAGCAGGAAGTTC
AGAGGTGGATCCAGCAAGCTAAACAAATCGCTAAGGACCTCCCCGGACAGTGCCGCACCCAGCCTAGCCAATGCCAGTTCCAGGGCCAGCAGCAATCTGC
ATGGTTTTGA
AA sequence
>Lus10023513 pacid=23160568 polypeptide=Lus10023513 locus=Lus10023513.g ID=Lus10023513.BGIv1.0 annot-version=v1.0
MAKLMSLAAVATAFLFLIVVDASVRTTVIIDEETNQGRGGGQGGQGQQQSCEQQIQQQDFLRSCQQFMWEKVQRGGRSHYYNQGRGGGEQSQYFDSCCDD
LKQLSTGCTCRGLERAIGQMRQEIQQQGQQQEVQRWIQQAKQIAKDLPGQCRTQPSQCQFQGQQQSAWF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54740 SESA5 seed storage albumin 5 (.1) Lus10023513
[exp]
0 1
AT3G21720 ICL isocitrate lyase (.1) Lus10015122
[exp]
11.8 0.9865
AT3G28857 bHLH PRE5 Paclobutrazol Resistance 5, ba... Lus10030490
[exp]
12.0 0.9719
AT5G45670 GDSL-like Lipase/Acylhydrolase... Lus10015842
[exp]
12.3 0.9657
AT1G18400 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) Lus10033562
[exp]
16.9 0.9856
AT4G35150 O-methyltransferase family pro... Lus10017699
[exp]
20.3 0.9853
AT4G09960 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-... Lus10005302
[exp]
22.0 0.9606
AT2G24180 CYP71B6 cytochrome p450 71b6 (.1) Lus10017697
[exp]
23.7 0.9852
AT4G16230 GDSL-like Lipase/Acylhydrolase... Lus10016916
[exp]
25.9 0.9851
AT1G10740 alpha/beta-Hydrolases superfam... Lus10030585
[exp]
26.2 0.9554
AT3G09790 UBQ8 ubiquitin 8 (.1) Lus10022258
[exp]
28.6 0.9837

Lus10023513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.