Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54820 470 / 2e-169 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT3G53420 452 / 5e-162 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37170 451 / 8e-162 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 447 / 3e-160 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G39010 441 / 2e-157 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT2G16850 438 / 6e-157 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT5G60660 434 / 4e-155 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT4G35100 432 / 2e-154 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 387 / 2e-136 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 377 / 2e-132 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040399 [exp] 551 / 0 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10023184 [exp] 471 / 2e-169 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10019934 [exp] 460 / 4e-165 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 440 / 2e-157 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 437 / 5e-156 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 436 / 8e-156 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10041397 [exp] 407 / 7e-145 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10028273 [exp] 373 / 5e-131 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10035483 [exp] 360 / 1e-125 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222700 [exp] 469 / 5e-169 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.008G039600 [exp] 468 / 2e-168 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.009G013900 [exp] 466 / 2e-167 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 464 / 5e-167 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 462 / 2e-166 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 453 / 1e-162 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 438 / 1e-156 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 435 / 1e-155 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.005G109300 [exp] 383 / 3e-135 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.016G113300 [exp] 382 / 2e-134 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10023515 pacid=23160600 polypeptide=Lus10023515 locus=Lus10023515.g ID=Lus10023515.BGIv1.0 annot-version=v1.0 ATGACGAAAGAAGTAGTGGGCCAGGACGCGTCGTTCTCCGCGAAGGACTACCACGACCCGCCGCCGGCGCCGCTGATAGACGCGGCGGAGCTGGGCAAGT GGTCCTTCTACAGAGCACTCATCGCCGAGTTCATCGCCACCTTGCTCTTCCTCTATATCACCGTCCTCACCGTCATCGGCTACAAGGCCCAGTCCGACCC GCTCAACAGCAAAGGCGACCCCTGCGCCGGCGTCGGAATCCTCGGCATCGCCTGGGCTTTCGGCGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGC ATCTCCGGGGGTCACATTAACCCGGCGGTGACGTTCGGTCTGTTGCTGGCGAGGAAGGTGTCATTAATAAGGGCGGTGATGTACATGGTGGCGCAATGCT TGGGTGCTATTTGCGGGGTTGGCTTAGTGAAGGCATTTCAGAGCTCATACTACACCAGGTACGGTGGCGGAGCCAACTCACTCAACAAGGGTTACAGCAC CGGCACCGGCTTAGGCGCTGAGATCATCGGGACGTTTGTTTTGGTGTACACCGTTTTCTCCGCCACCGACCCCAAGAGGAGCGCTCGCGACTCCCACGTC CCCGTTCTTGCACCACTCCCCATCGGCTTTGCTGTTTTCATGGTGCATCTGGCCACCATTCCCATCACCGGCACCGGCATCAACCCGGCCAGGAGTTTCG GCGCTGCCGTGATCTTCAACGAGGAGAAATCCTGGGACGACCATTGGATCTTTTGGGTGGGACCATTTATCGGAGCTGCAGGGGCGGCGTTCTTCTACCA GTCGATATTGAGAGCGGGTGCTGCTAAGGCTATAGCGTCTTTCAGGAGCCACCACACCTCAGGCCCCGCCGTGTAG
AA sequence Show only first row Show all	>Lus10023515 pacid=23160600 polypeptide=Lus10023515 locus=Lus10023515.g ID=Lus10023515.BGIv1.0 annot-version=v1.0 MTKEVVGQDASFSAKDYHDPPPAPLIDAAELGKWSFYRALIAEFIATLLFLYITVLTVIGYKAQSDPLNSKGDPCAGVGILGIAWAFGGMIFVLVYCTAG ISGGHINPAVTFGLLLARKVSLIRAVMYMVAQCLGAICGVGLVKAFQSSYYTRYGGGANSLNKGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHV PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNEEKSWDDHWIFWVGPFIGAAGAAFFYQSILRAGAAKAIASFRSHHTSGPAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	0	1
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	1.0	0.9539
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	2.0	0.9492
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	2.2	0.9393
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	4.0	0.9411
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	4.2	0.9443
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	5.1	0.9169
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	5.9	0.9356
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	7.2	0.9289
AT1G69935		SHW1	short hypocotyl in white light...		Lus10013285 [exp]	7.3	0.9137
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	8.9	0.9203

Compare expression of checked genes

Lus10023515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.