Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13570 449 / 5e-159 TDT, DCP2, ATDCP2 TRIDENT, decapping 2 (.1.2) AT5G47650 41 / 0.0006 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040400 [exp] 637 / 0 AT5G13570 461 / 2e-163 TRIDENT, decapping 2 (.1.2) Lus10006365 [exp] 44 / 0.0001 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10012319 [exp] 41 / 0.0007 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039500 [exp] 530 / 0 AT5G13570 460 / 1e-163 TRIDENT, decapping 2 (.1.2) Potri.010G222800 [exp] 511 / 0 AT5G13570 459 / 6e-163 TRIDENT, decapping 2 (.1.2) Potri.005G077500 [exp] 41 / 0.001 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain CL0261 [flax] [poplar] PF05026 [flax] [poplar] DCP2 Dcp2, box A domain
Representative CDS sequence Show only first row Show all	>Lus10023516 pacid=23160505 polypeptide=Lus10023516 locus=Lus10023516.g ID=Lus10023516.BGIv1.0 annot-version=v1.0 ATGTCTGGCCTGCACCGATCTTCCAGCGCTCCATTGAAGAACGCCCATGGTGGCCTTCCTCCTCAGGAACTTCTCGATGACCTCTGCAGCCGGTTTGTTT TGAATGTGCCCCAAGAGGATCAACAATCGTTTGAGAGAATTTTGTTCCTCGTGGAGTACGCACATTGGTTCTACGAGGACAATTCAGTTGAAAAGAATCC ATCCCTGAAGTCATTCAACTTGAAGGAGTTCACCTCTTTGTTGTTTAACAGCTGTGATGTTCTACGACCATATGTTCCTCATATAGATGACATATTCAAG GATTTCACGTCATACAAAGTTCGAGTACCTGTAACTGGGGCAATAATTCTTGACGAGACCTATGAACGGTGCTTGCTAGTGAAAGGGTGGAAAGGGACAA GTTGGAGTTTTCCACGGGGTAAAAAGAACAAAGACGAGGAAGACCATGCATGTGCTGTCCGAGAAGTTTTTGAGGAAACAGGTTTTGATGTGTCAAAGCT TCTTAACAAAGACCAATATATTGAGGAAACATTTGGACAACAGAGGGTTCGGCTCTACATAATTGCTGGTGTCAAGGATGATACAGTATTTGCTCCACAG ACCAAAAAGGAGATAAGTGAAATTGCCTGGCAGCGGCTTGATGAGCTCGAGCCAGCAAATAGCGATGTGATATCTCGCGGGATCACTGGGCTCAAACTTT ATATGGTTTCTCCATTTTTATCGTCTTTGAGATCGTGGATTTCATCTCATCCATCCCCAATGGCCCCAAGACCTGATCTTCCTCTCAAAGGTGTATCCAT GTGGAAAGCGAGGAACAGCCCTTCAGGAGTCAACACCAGCACTACTGTAACAGAGACCAAGTTGACAAAGGCGGCATCTGACGCTCATTATCATCATCCT CCACCACGACAACCTCCTTCTCCTGCTGGCGAAAGTTTCAGGAACTTCAGATTTGACACGGCTGCTATCTTACGAGCCATGGAAGCTGGGTTTTCTTAG
AA sequence Show only first row Show all	>Lus10023516 pacid=23160505 polypeptide=Lus10023516 locus=Lus10023516.g ID=Lus10023516.BGIv1.0 annot-version=v1.0 MSGLHRSSSAPLKNAHGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVEKNPSLKSFNLKEFTSLLFNSCDVLRPYVPHIDDIFK DFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRGKKNKDEEDHACAVREVFEETGFDVSKLLNKDQYIEETFGQQRVRLYIIAGVKDDTVFAPQ TKKEISEIAWQRLDELEPANSDVISRGITGLKLYMVSPFLSSLRSWISSHPSPMAPRPDLPLKGVSMWKARNSPSGVNTSTTVTETKLTKAASDAHYHHP PPRQPPSPAGESFRNFRFDTAAILRAMEAGFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	0	1
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	1.0	0.8882
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10006301 [exp]	1.7	0.8501
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	2.4	0.8782
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	2.8	0.8248
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	5.0	0.8409
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	5.5	0.8402
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	6.0	0.8474
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	10.1	0.8052
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	11.0	0.7858
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	11.2	0.8306

Compare expression of checked genes

Lus10023516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.