Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17530 813 / 0 phosphoglucosamine mutase family protein (.1.2.3) AT1G70820 339 / 6e-108 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040402 [exp] 933 / 0 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10015835 [exp] 332 / 5e-105 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10009327 [exp] 172 / 2e-48 AT1G70820 478 / 3e-167 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10020414 [exp] 127 / 1e-32 AT1G70820 344 / 2e-115 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223000 [exp] 888 / 0 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G039200 [exp] 867 / 0 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G131400 [exp] 336 / 1e-106 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10023518 pacid=23160625 polypeptide=Lus10023518 locus=Lus10023518.g ID=Lus10023518.BGIv1.0 annot-version=v1.0 ATGTCAGCGAAGGTTATGCAAAATGTTTTTGTAGCTCAGAATAAACAGATAGCACCCCGATACCAAAGGGACAGTTCTGCCCCTAATACCTGCAAATCCC TTCCCTTCCGTGGAGGGAAGTTGGCATGGAATGGCATTTCCTCCATGCACATGCACACACGGTCAAGAGTCCAACGGTTGCCTATTTTGTGCAATGTTAG CTCTCTAGCGTGCGTTCCCTTTGGTTCTAATAGGATTGTTTTGGAATCTGTTGCAGCTGCTGTTTCGGCTACTGCAGTTCCTTCGTTGGACAAAGCAGAC TTTATGAAACTCCAAAATGGCAGTGATATTCGAGGTGTAGCTGTTCCTGGTGTGGAGGGGGAACCTGTTAATCTCACAGAATCAGTTACGGAAGCAATAG CTGCTGCATTTGCTGCATGGTTATCTGAGAAGAAAAATACTGATGCATCCAAACCCTTTAAAGTCTCCGTTGGTCATGATTCCCGTGTATCAGCCAAGAA ATTACAGGATGCAGTTTCTCGAGGAATCGCTGGTGCAGGCTTGGATGTAATCCAATATGGATTGGCATCTACGCCAGCAATGTTTAATAGCACACTCACG GAAGACGAAGCATTCTTCTGTCCAGCAGATGGAGCTATAATGATTACAGCTAGTCATCTTCCTTTCAACAGGAACGGATTCAAGTTTTTCACAAACACTG GAGGGCTTGGGAAAGCTGACATCAAAGACATTTTGAACCGAGCTGCAGACATATATAATAAGTTTACCGACGAAAGTTTGTCTAACTCAAAGAAAAGAGC TTCCAAGTCCGTGAAGACAGTCGACTACATGGTTGTGTATACCTCTGACCTCGTGAAGGCCGTTCGCAAAGCTGCCGGGAACATAGAGAAGCCGTTAGAG GGATTCCATATTGTTGTTGATGCTGGAAATGGTGCTGGCGGATTCTTTGCTGCAAAAGTTCTTGAGCCTCTTGGAGCAATTACTTCCGGAAGTCAGTTCT TAGAGCCAGATGGCATGTTCCCCAACCATATTCCCAACCCAGAGGATAAGACAGCAATGATGGCCATAACTAAAGCAGTCCTTGATAACAAAGCTGATCT CGGTATCATCTTCGACACAGACGTTGATAGGTCTGCTGCTGTGGACTCTAGTGGACGTGAATTCAACCGCAATCGTCTAATCGCACTGATGTCTGCGATT GTTCTGGAGGAGGGAGCATCATTCTATCTCAGTTGCGTGCAAATGTTGCATGAGCCTTCCCTCCTTGATTTTTCACTTATAGTTTTGGATGTGTTCCAGC ATCCAGGAACAACTATTGTTACGGACAGTGTAACTTCAGATGGGTTGACTACATTTATTGAAAAGAAACTTGGGGGGAAGCATCATCGGTTCAAACGAGG CTATAAAAATGTCATTGATGAAGGCATCCGTTTGAACTGTGTTGGTGAGGAGTCACATCTTGCTATTGAAACCAGTGGACATGGAGCTCTGAAGGAAAAC AACTGGCTTGATGATGGTGCATACCTCATGGTCAAAATTTTAAACAAACTTGCTTCTGCTCGAGCTTCAGGAAACGGAAGTGGAAGCAAAGTTTTGACGG AACTGGTTGAGGGATTAGATGAACCTGGAGTCGCGGTGGAACTGAGACTGAAAATCGATCAGAATCATCCAGATCTCAAAGGAGGATCATTCCGGGAGTA TGGCGAGGCAGTTCTCAAGCACTTGGAAAACTTCGTAGCTTCTGACTCCAAACTTGAGAAAGCTCCGGTTAACTATGAAGGACTCCGAGTTTCCGGTTAT GGTGGATGGTTCCTTCTCAGGCTCTCTCTTCATGATCCTGTTCTTCCTCTCAACATTGAGGCACCAGGCGATGATGATGCCATCAAACTGGGACTTGCTG TGGCTTCTGCTGTGAAGGAGTTCCCAGCTCTGGACACATCTGTACTGGACAAGTTTCTTCAATCGTCATAA
AA sequence Show only first row Show all	>Lus10023518 pacid=23160625 polypeptide=Lus10023518 locus=Lus10023518.g ID=Lus10023518.BGIv1.0 annot-version=v1.0 MSAKVMQNVFVAQNKQIAPRYQRDSSAPNTCKSLPFRGGKLAWNGISSMHMHTRSRVQRLPILCNVSSLACVPFGSNRIVLESVAAAVSATAVPSLDKAD FMKLQNGSDIRGVAVPGVEGEPVNLTESVTEAIAAAFAAWLSEKKNTDASKPFKVSVGHDSRVSAKKLQDAVSRGIAGAGLDVIQYGLASTPAMFNSTLT EDEAFFCPADGAIMITASHLPFNRNGFKFFTNTGGLGKADIKDILNRAADIYNKFTDESLSNSKKRASKSVKTVDYMVVYTSDLVKAVRKAAGNIEKPLE GFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGMFPNHIPNPEDKTAMMAITKAVLDNKADLGIIFDTDVDRSAAVDSSGREFNRNRLIALMSAI VLEEGASFYLSCVQMLHEPSLLDFSLIVLDVFQHPGTTIVTDSVTSDGLTTFIEKKLGGKHHRFKRGYKNVIDEGIRLNCVGEESHLAIETSGHGALKEN NWLDDGAYLMVKILNKLASARASGNGSGSKVLTELVEGLDEPGVAVELRLKIDQNHPDLKGGSFREYGEAVLKHLENFVASDSKLEKAPVNYEGLRVSGY GGWFLLRLSLHDPVLPLNIEAPGDDDAIKLGLAVASAVKEFPALDTSVLDKFLQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17530			phosphoglucosamine mutase fami...		Lus10023518 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	12.1	0.8764
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	13.2	0.8756
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	16.1	0.8780
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	24.2	0.8503
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	24.6	0.8734
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	27.3	0.8435
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	28.6	0.8456
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	30.7	0.8723
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	30.9	0.8647
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	31.9	0.8645

Compare expression of checked genes

Lus10023518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.