Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 608 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 528 / 0 ARF ARF10 auxin response factor 10 (.1) AT1G77850 367 / 9e-120 ARF ARF17 auxin response factor 17 (.1) AT1G19850 259 / 1e-75 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19220 259 / 5e-75 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G37020 253 / 1e-74 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT5G20730 258 / 3e-74 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 249 / 4e-72 ARF ARF6 auxin response factor 6 (.1.2) AT5G62000 246 / 3e-71 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 239 / 3e-70 ARF ARF1 auxin response factor 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040403 [exp] 1150 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10026510 [exp] 598 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 559 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 520 / 3e-178 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 361 / 2e-117 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 359 / 2e-116 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10024754 [exp] 359 / 2e-116 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10016091 [exp] 308 / 8e-101 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10010969 [exp] 252 / 6e-74 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223200 [exp] 748 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 737 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 619 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.016G090300 [exp] 607 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.009G014800 [exp] 603 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.006G127500 [exp] 598 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.002G089900 [exp] 391 / 5e-129 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 365 / 6e-119 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.006G138500 [exp] 267 / 1e-77 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.017G141000 [exp] 255 / 4e-75 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10023519 pacid=23160481 polypeptide=Lus10023519 locus=Lus10023519.g ID=Lus10023519.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTGGATTCACAGTTCTGGCACGCCTGCGCCGGCGGCATGGTCCAAATCCCTCCGGTGAACTCCAAAGTTTACTACTTTCCTCAAGGCCACG CCGAGCATGCACAATTGACCGCCGATTTCGCCCCGCCTAGCTGCCAGATTCCTTCAATGGTGCCTTGCAAAGTCTCCGCCATTAACTACATGGCAGATCC TGAAACGGATGAGGTATTTGCTAAAATCAGTCTTATCCCGTTAATAAGTGGTTCTAGGGATGATAATAGTAATGATGATGGGTTGTTTGAGTCTTCTCAA GAAGAAAAGACTGCATCTTTCGCTAAGCAACTCACTCAATCTGATGCCAATAACGGCGGCGGATTCTCGGTGCCTAGATACTGTGCTGAAACCATATTTC CAAGGCTGGATTACAACGCTGAACCTCCTGTCCAGACCATACTCGCTAAAGATGTCCATGGCCAGACTTGGAAGTTCAGGCATATCTATAGAGGGACTCC TCGTAGGCATTTGTTGACAACTGGCTGGAGCAATTTCGTGAACCAGAAGAAGCTCGTGGCCGGGGATTCGATCGTGTTCCTCCGAGCTGACAATGGCGAT CTTTGTGTTGGGATCAGGCGTGCCAGAAGAAATGAGTGTGCTCCATCTGGGTGGAATTCATATGGCTTTATGAGGGAGGATTATGAGTGTAGGAAGAATG TTGTTAGTAATGGGGGGGATGTGACTATGAAGGCGAAAATTAGGGCGGAATCTGTTGTGGAGGCTGCAACTCTTGCTGCCAAAGGACGTCCCTTTGAGGT TGTTTATTATCCGAGTGCTGGCACTCCTGAGTACTGGGTTAGAGCTTCTGCTGTTAGAGCTGCAATGCAGATGCAGTGGTATCCCGGGATACGGTTTAAG ATGCCGTTCGAGACTGAGGATTCTTCTAGGATTAGCTGCTTTATGGGAACCATATCTTCTGTTCAAGTTGCCGATCCCATCCACTGGCCGAATTCTCCGT GGCGTCTTCTACAGGTAGAATGGGACGAGCCGGAGTTGCTTCACAACGTGAAGCGTGTCAACCCATGGTTGGTTGAATTAGTCTCGAGCATGCCAGCCAT TCACATAACTCCTTTCTCGCCGCCAAGAAAGAAGCTGAGGTTTCCACAGGAATCGGATTTCTCCTTGATGAGTCAACTACCTCTTCCACCGTTCACCGGG AACTCGCTCAGGCCAAACAACAGACCTCTGTGTTGTGTTCCGAACACCAACATTCCTGCAGGTATACAGGGAGCCAGGCATACGCATCATTTCGATCTAT TACCTTCTTCGGATCTCCACTTCAACAAACTGCAGCAACAGACCGGTCAACTGTTACCTTTCGGGTTTGCACCGAAATTCAACATCCCGATGAACAACTT CGCAGCGAAGACCAACTGCGATGAGAACGTATCATGCTTGCTGACTATCGGTGGCAGTAGCCCCAAGGAAAGCAGCGAAACGAAGAAGATGCCCCACATA TTCTTGTTCGGTCAGCTCATTGTACCAGATCATCACACTTCTTCTGGAAGCTGCTCCAGCGAGTCATGGAATGGAAACAGTACATCTGTTGGCAATGCAG AGAAGATTATGATGACAAACCTCTCCGAGGGTTCGAGCTCTTCAGTGTACCAGAACGGTCCGCTGGAAAATTCTTCAGATGCAGGGTCCCCACGGTACAA ACATCTCCCCATAAACGATGGTGCAGGGCGGACACTTGACTTGTCGATGATGGGATCGTACAAGGAACTCAACGGGAAATTGGCCGACATGCTTGGCATG GAACGATCATGA
AA sequence Show only first row Show all	>Lus10023519 pacid=23160481 polypeptide=Lus10023519 locus=Lus10023519.g ID=Lus10023519.BGIv1.0 annot-version=v1.0 MKCLDSQFWHACAGGMVQIPPVNSKVYYFPQGHAEHAQLTADFAPPSCQIPSMVPCKVSAINYMADPETDEVFAKISLIPLISGSRDDNSNDDGLFESSQ EEKTASFAKQLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRADNGD LCVGIRRARRNECAPSGWNSYGFMREDYECRKNVVSNGGDVTMKAKIRAESVVEAATLAAKGRPFEVVYYPSAGTPEYWVRASAVRAAMQMQWYPGIRFK MPFETEDSSRISCFMGTISSVQVADPIHWPNSPWRLLQVEWDEPELLHNVKRVNPWLVELVSSMPAIHITPFSPPRKKLRFPQESDFSLMSQLPLPPFTG NSLRPNNRPLCCVPNTNIPAGIQGARHTHHFDLLPSSDLHFNKLQQQTGQLLPFGFAPKFNIPMNNFAAKTNCDENVSCLLTIGGSSPKESSETKKMPHI FLFGQLIVPDHHTSSGSCSSESWNGNSTSVGNAEKIMMTNLSEGSSSSVYQNGPLENSSDAGSPRYKHLPINDGAGRTLDLSMMGSYKELNGKLADMLGM ERS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10023519 [exp]	0	1
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10002476 [exp]	3.3	0.8611
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	3.5	0.8858
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	3.6	0.8908
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	14.1	0.8374
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	16.0	0.8752
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	17.5	0.8799
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	19.0	0.8824
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	28.4	0.7971
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	31.0	0.8592
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	32.6	0.8140

Compare expression of checked genes

Lus10023519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.