Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52155 244 / 2e-81 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040405 [exp] 428 / 4e-153 AT3G52155 256 / 2e-86 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000600 [exp] 273 / 7e-92 AT3G52155 251 / 2e-84 Phosphoglycerate mutase family protein (.1) Potri.016G000900 [exp] 263 / 2e-88 AT3G52155 270 / 8e-92 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10023521 pacid=23160519 polypeptide=Lus10023521 locus=Lus10023521.g ID=Lus10023521.BGIv1.0 annot-version=v1.0 ATGAACTGTAGAAAAACTCGGTCAAGTTTCAGTTCAGAGGCAGCCAAAGAATTCGACGAATCCGCAGAGAAGACGATGATGATACTGAGAAGCACTCACT GCTTCTGCTCTTCTCCATCATTCTTCCTCCATCATAATCACACTAACAACAGCAACGCTTTCCCAAACCCAATTCTCTCGTTCTCTTCATTCACCCCAAA CTCACCTCATCGCCGCCTTCTTCTCCGTTCCTCCTCCGCCGCCGCCCCTCTCCGCGCCGCCGTTTCCCTCGTCACCGATGAATCCTCCTCTCCCTCTACC TCGGGCTCCGATAAAAGCGTCTCTCGCCGCCTCATCCTCCTCCGCCACGCTCACAGTTCCCTCTCCCAACCTGCCCTCCGAGACCACGATCGTCCGCTTA CTGTAACTGGTCAATCCGAGGCGGCTAAAGTTGCGGTGGAGCTCCAGGAGCTGGGTTGGATCCCTCAGCTCATCTTGTTAAGTGACGCGGTGAGAACTAG AGAAACGCTGAAGATAATGCAGGAAAATGCACCGGCATTTTTGGAAGCGGAGGTTCGATTCATCCCTAGCTTCTATTCCATTGCAGCAATGGATGGACAG ACTGCTGAACACCTTCAGCTTTCCGTCTGTGAGCATTCCACCAACGACATTTTCACCGTTATGTGCATGGGACATAATAGAGGGTGGGAGGAAGCAGCGT CCATGTTTACTGGCACTCTTCTTGAACTGAAGACTTGCAATGCTGCTTTGCTTGAAGCTGCCGGAAAGTCTTGGGTAGAGGCATTTGCTTCGGCAGGGCT TGGCGGGTGGAAGCTTCAACGCATAGTGAAACCAATTGTTGGGGTGTAG
AA sequence Show only first row Show all	>Lus10023521 pacid=23160519 polypeptide=Lus10023521 locus=Lus10023521.g ID=Lus10023521.BGIv1.0 annot-version=v1.0 MNCRKTRSSFSSEAAKEFDESAEKTMMILRSTHCFCSSPSFFLHHNHTNNSNAFPNPILSFSSFTPNSPHRRLLLRSSSAAAPLRAAVSLVTDESSSPST SGSDKSVSRRLILLRHAHSSLSQPALRDHDRPLTVTGQSEAAKVAVELQELGWIPQLILLSDAVRTRETLKIMQENAPAFLEAEVRFIPSFYSIAAMDGQ TAEHLQLSVCEHSTNDIFTVMCMGHNRGWEEAASMFTGTLLELKTCNAALLEAAGKSWVEAFASAGLGGWKLQRIVKPIVGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52155			Phosphoglycerate mutase family...		Lus10023521 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	1.4	0.8342
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10002428 [exp]	15.6	0.8221
					Lus10025700 [exp]	22.4	0.7589
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	25.3	0.7429
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10020199 [exp]	25.7	0.8088
					Lus10008155 [exp]	30.5	0.7619
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	31.8	0.7755
AT1G78620			Protein of unknown function DU...		Lus10013691 [exp]	32.6	0.7299
AT4G34090			unknown protein		Lus10041575 [exp]	33.3	0.8044
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	34.6	0.7271

Compare expression of checked genes

Lus10023521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.