Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28320 828 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 817 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G45560 300 / 3e-91 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 299 / 6e-91 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G35180 187 / 6e-50 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 149 / 5e-40 Protein of unknown function (DUF1336) (.1) AT1G06050 147 / 2e-39 Protein of unknown function (DUF1336) (.1) AT5G24990 130 / 1e-33 Protein of unknown function (DUF1336) (.1) AT5G25010 125 / 6e-32 Protein of unknown function (DUF1336) (.1) AT5G25020 95 / 2e-21 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040406 [exp] 1347 / 0 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10021465 [exp] 788 / 0 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 716 / 0 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10007596 [exp] 288 / 1e-86 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 286 / 5e-86 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10040015 [exp] 219 / 5e-61 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 192 / 1e-51 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 180 / 1e-48 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 164 / 3e-42 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038800 [exp] 926 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 924 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 843 / 0 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.001G132900 [exp] 295 / 2e-89 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 279 / 2e-83 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 244 / 3e-70 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.008G213000 [exp] 162 / 2e-41 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G014234 [exp] 148 / 2e-39 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 135 / 5e-35 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 129 / 8e-33 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0209 [flax] [poplar] PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10023522 pacid=23160610 polypeptide=Lus10023522 locus=Lus10023522.g ID=Lus10023522.BGIv1.0 annot-version=v1.0 ATGGGTATCCAGGAAAATGATGCCAAGATGGAGGGCTGGTTGTACACCATCAGGTCCAATAGGTTTGGTCTGCAGTTTTCCAGGAAGAGGTACTATGTTC TTGAGCAGAATTGTCTCAAGTGCTACAGGGCCATTCCCACGTCAGATGACGAGGAATTGACGAGAAGTGCTGCAATAGATTCCTGCATTAAGGTCACAGA CAATGGAAGAGAGAACATCAACAGAAAACACCTTGAATCAAGTAGTTCAGAAGAAGCTGCAAGATGGATCTCATCACTTAAAAATGCTTTCTTAAAGGAG TGTCCAAATCCCACCCAGAACTTTGTGGCCATCTCCAAGAGGAAGTGGCCTCCTCTAAGACTAAGCATTTCAAGGAGGACCGGATCGAAAAGGTCGATAG ATTATTGCTCTACATTGCATACTGAGGCTATGACATCTGATGTCATTGCACCCTCACCTTGGAAAATATTCGGCTGTCAAAATGGGCTGCGCCTTTTCAG AGAAGCAAAGGATGCATATTCCAGAGATGGGCGGTGGGATGACAATCCAGCAATCATGGGAGTTGGTGTGGTTGATGCTACTTCAGAAGCCATTTTCAGG ACTGTGATGTCACTTGGTCCAACAAGGGCAGAATGGGACTTCTGTTTCTACAGAGGTAGTGTGGTTGAACATCTGGATGGTCATACTGACATCATCCATA AGCAACTCTACAGTGAGTGGCTTCCATGGGGGATGCGACGAAGGGACTTGCTCTTGCGACGATACTGGAGAAGAGAGGATGATGGAACATATGTAATCCT ATACCATTCCGTGATTCACAAGAAATGTCCACAACAGAATGGCTATGTTCGAGCTTGCCTAAAAAGCGGTGGATATGTGATCACTCCTATCGACAATGGG AACCGGACACTCGTGAAACACATGCTTGCAGCAGATTGGAAGTTCTGGAAGATCTATCTCCGGCCTGCATCTGGGAAATCAGTAACGATCCGCATGGTTG AAAGAGTTGCAGCATTGAGAGAAATGTTCAGAGCAAAAGCAGGAAACTACTCCATCTCAAGAGAACTGGTTCGCCCCCGGAAAGTGTCCCCCATTGAAAT GCGTAAATCTGCTATAGATGAAGTTACTAAAATACCCTCGGAGAAGACGAAACCGGATGTTACTTCAACGAACGAGGAGCTCGGACGAAAGGGCCCACTT TACACTAGCTTGGTAGCTCTCAATGATTCCTCTGATGAGTTCTTTGATGTTCCTGACCAGGAACTGATAGAGTTTGATCAGACAGAAGTGGATTGGTCCT CATCTGGTACCCCAACAGACTGTGCACCGGATATAGCACAGCAGCCTGCATTCTCATCTGCTGCTGGACTTGTGAAGAAATTGCATGACCTTGCTGTCCA AAAGAAGGGTTATGTTGACTTACAAGACACATCAGAAGACAGTGGATTCTGTTCCTATGGATCAACACTTCAAAAGGACTCAAATGGTTCACTTCCATGC AGTTGGTCTTCTGCTGACCCTTCAACTTTCTTGATCCGCGGCGAAACCTATTTGAAAGACAGCCGGAAGGTGAAGGCAAGAGGAACTTTGATGCAGATGG TAGGAGCAGACTGGCTAAGGTCTGACCGATGGGAGCAGGATCTCGGAAGCCGGCCTGGTGGAATCGTTCAGAAATATGCGCTACAGAATCGGCCCGAATT CTTCTTCATTGTCAACATTCAGGTTCCTGGCGTGCCGGTTTACACACTGGCCTTATACTACATGCTCAAGACTCCACTGGAACAACATGCATCGTTGAAC AGCTTTGTTAATGGAGATGATGCTTACCGAAACGCGAGGTTCAAACTCATTCCGTTCATCCCCAAGGGATCTTGGATAGTGAAGCAAAGTGTTGGGAAGA AATCCTGCTTGGTTGGTCAAGCACTTGACATCCATTACTTCCGTGGCAAGAATTACTTGGAGCTTGCAATCGATGTCGGATCATCGACTGTTGCCAGAGG TGTGGTGAGTCTTGTCAATGGTTACATGACCAATCTCGTAGTGGAAATGGCTTTCTTGATTCAGGCTAACACGGAGGAAGAGCTGCCGGAGCTGCTGCTA GGAACATGTCGGCTGAACAATCTAGATGTCGGGAAAGCAGTTGGCGTGTGA
AA sequence Show only first row Show all	>Lus10023522 pacid=23160610 polypeptide=Lus10023522 locus=Lus10023522.g ID=Lus10023522.BGIv1.0 annot-version=v1.0 MGIQENDAKMEGWLYTIRSNRFGLQFSRKRYYVLEQNCLKCYRAIPTSDDEELTRSAAIDSCIKVTDNGRENINRKHLESSSSEEAARWISSLKNAFLKE CPNPTQNFVAISKRKWPPLRLSISRRTGSKRSIDYCSTLHTEAMTSDVIAPSPWKIFGCQNGLRLFREAKDAYSRDGRWDDNPAIMGVGVVDATSEAIFR TVMSLGPTRAEWDFCFYRGSVVEHLDGHTDIIHKQLYSEWLPWGMRRRDLLLRRYWRREDDGTYVILYHSVIHKKCPQQNGYVRACLKSGGYVITPIDNG NRTLVKHMLAADWKFWKIYLRPASGKSVTIRMVERVAALREMFRAKAGNYSISRELVRPRKVSPIEMRKSAIDEVTKIPSEKTKPDVTSTNEELGRKGPL YTSLVALNDSSDEFFDVPDQELIEFDQTEVDWSSSGTPTDCAPDIAQQPAFSSAAGLVKKLHDLAVQKKGYVDLQDTSEDSGFCSYGSTLQKDSNGSLPC SWSSADPSTFLIRGETYLKDSRKVKARGTLMQMVGADWLRSDRWEQDLGSRPGGIVQKYALQNRPEFFFIVNIQVPGVPVYTLALYYMLKTPLEQHASLN SFVNGDDAYRNARFKLIPFIPKGSWIVKQSVGKKSCLVGQALDIHYFRGKNYLELAIDVGSSTVARGVVSLVNGYMTNLVVEMAFLIQANTEEELPELLL GTCRLNNLDVGKAVGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28320			Pleckstrin homology (PH) and l...		Lus10023522 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	3.9	1.0000
					Lus10011496 [exp]	4.2	1.0000
					Lus10011759 [exp]	6.7	1.0000
					Lus10024550 [exp]	8.5	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	8.8	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	8.9	1.0000
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	10.6	1.0000
					Lus10013545 [exp]	11.3	1.0000
					Lus10034512 [exp]	12.0	1.0000
					Lus10008049 [exp]	12.5	1.0000

Compare expression of checked genes

Lus10023522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.